| Back to Multiple platform build/check report for BioC 3.14 |
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This page was generated on 2022-04-13 12:06:36 -0400 (Wed, 13 Apr 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4324 |
| tokay2 | Windows Server 2012 R2 Standard | x64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4077 |
| machv2 | macOS 10.14.6 Mojave | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4137 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
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To the developers/maintainers of the GeneRegionScan package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/GeneRegionScan.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 732/2083 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| GeneRegionScan 1.50.0 (landing page) Lasse Folkersen
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK |  | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: GeneRegionScan |
| Version: 1.50.0 |
| Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/GeneRegionScan_1.50.0.tar.gz && rm -rf GeneRegionScan.buildbin-libdir && mkdir GeneRegionScan.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GeneRegionScan.buildbin-libdir GeneRegionScan_1.50.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL GeneRegionScan_1.50.0.zip && rm GeneRegionScan_1.50.0.tar.gz GeneRegionScan_1.50.0.zip |
| StartedAt: 2022-04-12 04:49:07 -0400 (Tue, 12 Apr 2022) |
| EndedAt: 2022-04-12 04:50:48 -0400 (Tue, 12 Apr 2022) |
| EllapsedTime: 101.0 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/GeneRegionScan_1.50.0.tar.gz && rm -rf GeneRegionScan.buildbin-libdir && mkdir GeneRegionScan.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GeneRegionScan.buildbin-libdir GeneRegionScan_1.50.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL GeneRegionScan_1.50.0.zip && rm GeneRegionScan_1.50.0.tar.gz GeneRegionScan_1.50.0.zip
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% Total % Received % Xferd Average Speed Time Time Time Current
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0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
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44 7397k 44 3320k 0 0 2293k 0 0:00:03 0:00:01 0:00:02 2293k
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100 7397k 100 7397k 0 0 2928k 0 0:00:02 0:00:02 --:--:-- 2928k
install for i386
* installing *source* package 'GeneRegionScan' ...
** using staged installation
** R
** data
** exec
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'GeneRegionScan'
finding HTML links ... done
Nondocumented-objects html
ProbeLevelSet-class html
addSnpPdata html
checkForFileInPath html
doProbeLinear html
doProbeTTest html
exampleProbeLevelSet html
excludeDoubleMatchingProbes html
exonStructure html
findProbePositions html
findSequenceInGenome html
geneRegionScan html
REDIRECT:topic Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.14-bioc/meat/GeneRegionScan.buildbin-libdir/00LOCK-GeneRegionScan/00new/GeneRegionScan/help/GeneRegionScan.html
genomic html
getLocalMetaprobeIntensities html
getLocalProbeIntensities html
getMetaprobesetsFromRegionOfInterest html
getProbeLevelAnnotationForExonArrays html
getProbesetsFromMetaprobeset html
getProbesetsFromRegionOfInterest html
getSequence html
getServerProbeIntensities html
mrna html
plotCoexpression html
plotOnGene html
plotStatistics html
readGeneInput html
translateSampleNames html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'GeneRegionScan' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'GeneRegionScan' as GeneRegionScan_1.50.0.zip
* DONE (GeneRegionScan)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'GeneRegionScan' successfully unpacked and MD5 sums checked