Multiple platform build/check report for BioC 3.14 - CHECK results for GCSConnection on tokay2

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo2	Linux (Ubuntu 20.04.4 LTS)	x86_64	4.1.3 (2022-03-10) -- "One Push-Up"	4324
tokay2	Windows Server 2012 R2 Standard	x64	4.1.3 (2022-03-10) -- "One Push-Up"	4077
machv2	macOS 10.14.6 Mojave	x86_64	4.1.3 (2022-03-10) -- "One Push-Up"	4137
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

Package: GCSConnection

Version: 1.6.0

Command: C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:GCSConnection.install-out.txt --library=C:\Users\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings GCSConnection_1.6.0.tar.gz

StartedAt: 2022-04-12 20:03:40 -0400 (Tue, 12 Apr 2022)

EndedAt: 2022-04-12 20:07:33 -0400 (Tue, 12 Apr 2022)

EllapsedTime: 233.4 seconds

RetCode: 1

Status: ERROR

CheckDir: GCSConnection.Rcheck

Warnings: NA

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###
### Running command:
###
###   C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:GCSConnection.install-out.txt --library=C:\Users\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings GCSConnection_1.6.0.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.14-bioc/meat/GCSConnection.Rcheck'
* using R version 4.1.3 (2022-03-10)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'GCSConnection/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'GCSConnection' version '1.6.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'GCSConnection' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking compiled code ... NOTE
Note: information on .o files for i386 is not available
Note: information on .o files for x64 is not available
File 'C:/Users/biocbuild/bbs-3.14-bioc/R/library/GCSConnection/libs/i386/GCSConnection.dll':
  Found 'abort', possibly from 'abort' (C), 'runtime' (Fortran)
  Found 'exit', possibly from 'exit' (C), 'stop' (Fortran)
  Found 'printf', possibly from 'printf' (C)
File 'C:/Users/biocbuild/bbs-3.14-bioc/R/library/GCSConnection/libs/x64/GCSConnection.dll':
  Found 'abort', possibly from 'abort' (C), 'runtime' (Fortran)
  Found 'exit', possibly from 'exit' (C), 'stop' (Fortran)
  Found 'printf', possibly from 'printf' (C)
File 'GCSConnection/libs/i386/GCSConnection.dll':
  Found non-API call to R: 'R_new_custom_connection'
File 'GCSConnection/libs/x64/GCSConnection.dll':
  Found non-API call to R: 'R_new_custom_connection'

Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs. The detected symbols are linked into the code but
might come from libraries and not actually be called.
Compiled code should not call non-API entry points in R.

See 'Writing portable packages' in the 'Writing R Extensions' manual.
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
  Running 'testthat.R'
 ERROR
Running the tests in 'tests/testthat.R' failed.
Last 13 lines of output:
  Error in `catch_error(r)`: An error has occured when sending a REST request(Error code: 401). 
  Either you do not have the access rights, or you have sent an invalid billing project
  
  Backtrace:
      x
   1. +-testthat::expect_true(gcs_is_requester_pays("bioconductor_rp")) at test_credentials.R:21:4
   2. | \-testthat::quasi_label(enquo(object), label, arg = "object")
   3. |   \-rlang::eval_bare(expr, quo_get_env(quo))
   4. \-GCSConnection::gcs_is_requester_pays("bioconductor_rp")
   5.   \-GCSConnection:::.is_requester_pays(bucket)
   6.     \-GCSConnection:::catch_error(r)
  
  [ FAIL 1 | WARN 0 | SKIP 0 | PASS 85 ]
  Error: Test failures
  Execution halted
** running tests for arch 'x64' ...
  Running 'testthat.R'
 ERROR
Running the tests in 'tests/testthat.R' failed.
Last 13 lines of output:
  Error in `catch_error(r)`: An error has occured when sending a REST request(Error code: 401). 
  Either you do not have the access rights, or you have sent an invalid billing project
  
  Backtrace:
      x
   1. +-testthat::expect_true(gcs_is_requester_pays("bioconductor_rp")) at test_credentials.R:21:4
   2. | \-testthat::quasi_label(enquo(object), label, arg = "object")
   3. |   \-rlang::eval_bare(expr, quo_get_env(quo))
   4. \-GCSConnection::gcs_is_requester_pays("bioconductor_rp")
   5.   \-GCSConnection:::.is_requester_pays(bucket)
   6.     \-GCSConnection:::catch_error(r)
  
  [ FAIL 1 | WARN 0 | SKIP 0 | PASS 85 ]
  Error: Test failures
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 2 ERRORs, 1 NOTE
See
  'C:/Users/biocbuild/bbs-3.14-bioc/meat/GCSConnection.Rcheck/00check.log'
for details.

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/GCSConnection_1.6.0.tar.gz && rm -rf GCSConnection.buildbin-libdir && mkdir GCSConnection.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GCSConnection.buildbin-libdir GCSConnection_1.6.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL GCSConnection_1.6.0.zip && rm GCSConnection_1.6.0.tar.gz GCSConnection_1.6.0.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 36474  100 36474    0     0   307k      0 --:--:-- --:--:-- --:--:--  309k

install for i386

* installing *source* package 'GCSConnection' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c C_interface.cpp -o C_interface.o
"C:/rtools40/mingw32/bin/"g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw32/bin/"g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c altrep.cpp -o altrep.o
"C:/rtools40/mingw32/bin/"g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c connection.cpp -o connection.o
"C:/rtools40/mingw32/bin/"g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c utils.cpp -o utils.o
C:/rtools40/mingw32/bin/g++ -shared -s -static-libgcc -o GCSConnection.dll tmp.def C_interface.o RcppExports.o altrep.o connection.o utils.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/GCSConnection.buildbin-libdir/00LOCK-GCSConnection/00new/GCSConnection/libs/i386
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'GCSConnection'
    finding HTML links ... done
    FileClass-class                         html  
    FolderClass-class                       html  
    as.character-FileClass-method           html  
    as.character-FolderClass-method         html  
    authentication                          html  
    buffer_size                             html  
    gcs_connection                          html  
    gcs_cp                                  html  
    gcs_dir                                 html  
    gcs_rm                                  html  
    names-FileClass-method                  html  
    names-FolderClass-method                html  
    requester_pays                          html  
    show-FileClass-method                   html  
    show-FolderClass-method                 html  
    subset-FileClass-method                 html  
    subset-FolderClass-method               html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'GCSConnection' ...
** libs
"C:/rtools40/mingw64/bin/"g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c C_interface.cpp -o C_interface.o
"C:/rtools40/mingw64/bin/"g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw64/bin/"g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c altrep.cpp -o altrep.o
"C:/rtools40/mingw64/bin/"g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c connection.cpp -o connection.o
"C:/rtools40/mingw64/bin/"g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c utils.cpp -o utils.o
C:/rtools40/mingw64/bin/g++ -shared -s -static-libgcc -o GCSConnection.dll tmp.def C_interface.o RcppExports.o altrep.o connection.o utils.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/GCSConnection.buildbin-libdir/GCSConnection/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'GCSConnection' as GCSConnection_1.6.0.zip
* DONE (GCSConnection)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'GCSConnection' successfully unpacked and MD5 sums checked


R version 4.1.3 (2022-03-10) -- "One Push-Up"
Copyright (C) 2022 The R Foundation for Statistical Computing
Platform: i386-w64-mingw32/i386 (32-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> library(GCSConnection)
> 
> test_check("GCSConnection")
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 85 ]

== Failed tests ================================================================
-- Error (test_credentials.R:21:5): requester pays -----------------------------
Error in `catch_error(r)`: An error has occured when sending a REST request(Error code: 401). 
Either you do not have the access rights, or you have sent an invalid billing project

Backtrace:
    x
 1. +-testthat::expect_true(gcs_is_requester_pays("bioconductor_rp")) at test_credentials.R:21:4
 2. | \-testthat::quasi_label(enquo(object), label, arg = "object")
 3. |   \-rlang::eval_bare(expr, quo_get_env(quo))
 4. \-GCSConnection::gcs_is_requester_pays("bioconductor_rp")
 5.   \-GCSConnection:::.is_requester_pays(bucket)
 6.     \-GCSConnection:::catch_error(r)

[ FAIL 1 | WARN 0 | SKIP 0 | PASS 85 ]
Error: Test failures
Execution halted


R version 4.1.3 (2022-03-10) -- "One Push-Up"
Copyright (C) 2022 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> library(GCSConnection)
> 
> test_check("GCSConnection")
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 85 ]

== Failed tests ================================================================
-- Error (test_credentials.R:21:5): requester pays -----------------------------
Error in `catch_error(r)`: An error has occured when sending a REST request(Error code: 401). 
Either you do not have the access rights, or you have sent an invalid billing project

Backtrace:
    x
 1. +-testthat::expect_true(gcs_is_requester_pays("bioconductor_rp")) at test_credentials.R:21:4
 2. | \-testthat::quasi_label(enquo(object), label, arg = "object")
 3. |   \-rlang::eval_bare(expr, quo_get_env(quo))
 4. \-GCSConnection::gcs_is_requester_pays("bioconductor_rp")
 5.   \-GCSConnection:::.is_requester_pays(bucket)
 6.     \-GCSConnection:::catch_error(r)

[ FAIL 1 | WARN 0 | SKIP 0 | PASS 85 ]
Error: Test failures
Execution halted

name	user	system	elapsed
authentication	0.00	0.01	0.02
buffer_size	0	0	0
gcs_connection	0.08	0.00	0.40
gcs_cp	0.08	0.02	0.60
gcs_dir	0.42	0.02	2.34
gcs_rm	0	0	0
names-FileClass-method	0.12	0.01	0.14
names-FolderClass-method	0.02	0.00	0.02
requester_pays	0	0	0

name	user	system	elapsed
authentication	0	0	0
buffer_size	0	0	0
gcs_connection	0.05	0.00	0.33
gcs_cp	0.06	0.01	0.44
gcs_dir	0.44	0.02	2.25
gcs_rm	0	0	0
names-FileClass-method	0.11	0.00	0.11
names-FolderClass-method	0.01	0.00	0.01
requester_pays	0	0	0

CHECK results for GCSConnection on tokay2

Summary

Command output

Installation output

Tests output

Example timings