Rodrigo Alvarez-Glez
| Snapshot Date: 2022-04-12 01:55:07 -0400 (Tue, 12 Apr 2022) |
| git_url: https://git.bioconductor.org/packages/DFP |
| git_branch: RELEASE_3_14 |
| git_last_commit: 7cc849a |
| git_last_commit_date: 2021-10-26 11:52:46 -0400 (Tue, 26 Oct 2021) |
| Back to Multiple platform build/check report for BioC 3.14 |
|
This page was generated on 2022-04-13 12:06:27 -0400 (Wed, 13 Apr 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4324 |
| tokay2 | Windows Server 2012 R2 Standard | x64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4077 |
| machv2 | macOS 10.14.6 Mojave | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4137 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the DFP package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/DFP.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 501/2083 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| DFP 1.52.0 (landing page) Rodrigo Alvarez-Glez
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: DFP |
| Version: 1.52.0 |
| Command: C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:DFP.install-out.txt --library=C:\Users\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings DFP_1.52.0.tar.gz |
| StartedAt: 2022-04-12 18:36:10 -0400 (Tue, 12 Apr 2022) |
| EndedAt: 2022-04-12 18:37:05 -0400 (Tue, 12 Apr 2022) |
| EllapsedTime: 54.2 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: DFP.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:DFP.install-out.txt --library=C:\Users\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings DFP_1.52.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory 'C:/Users/biocbuild/bbs-3.14-bioc/meat/DFP.Rcheck'
* using R version 4.1.3 (2022-03-10)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'DFP/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'DFP' version '1.52.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'DFP' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
'library' or 'require' call to 'Biobase' which was already attached by Depends.
Please remove these calls from your code.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
plotDiscriminantFuzzyPattern: warning in matrix(x, nr = ly, nc = lx,
byrow = TRUE): partial argument match of 'nr' to 'nrow'
plotDiscriminantFuzzyPattern: warning in matrix(x, nr = ly, nc = lx,
byrow = TRUE): partial argument match of 'nc' to 'ncol'
plotDiscriminantFuzzyPattern: warning in matrix(y, nr = ly, nc = lx):
partial argument match of 'nr' to 'nrow'
plotDiscriminantFuzzyPattern: warning in matrix(y, nr = ly, nc = lx):
partial argument match of 'nc' to 'ncol'
.plotGeneMF: no visible global function definition for 'curve'
.plotGeneMF: no visible binding for global variable 'x'
.plotGeneMF: no visible global function definition for 'abline'
.plotGeneMF: no visible global function definition for 'palette'
.plotGeneMF: no visible global function definition for 'rainbow'
.plotGeneMF: no visible global function definition for 'legend'
calculateFuzzyPatterns: no visible global function definition for
'head'
discretizeExpressionValues: no visible global function definition for
'head'
discriminantFuzzyPattern: no visible global function definition for
'head'
plotDiscriminantFuzzyPattern: no visible global function definition for
'image'
plotDiscriminantFuzzyPattern: no visible global function definition for
'par'
plotDiscriminantFuzzyPattern: no visible global function definition for
'axis'
plotDiscriminantFuzzyPattern: no visible global function definition for
'text'
plotMembershipFunctions: no visible global function definition for
'par'
readCSV: no visible global function definition for 'read.table'
readCSV: no visible global function definition for 'head'
Undefined global functions or variables:
abline axis curve head image legend palette par rainbow read.table
text x
Consider adding
importFrom("grDevices", "palette", "rainbow")
importFrom("graphics", "abline", "axis", "curve", "image", "legend",
"par", "text")
importFrom("utils", "head", "read.table")
to your NAMESPACE file.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 2 NOTEs
See
'C:/Users/biocbuild/bbs-3.14-bioc/meat/DFP.Rcheck/00check.log'
for details.
DFP.Rcheck/00install.out
##############################################################################
##############################################################################
###
### Running command:
###
### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/DFP_1.52.0.tar.gz && rm -rf DFP.buildbin-libdir && mkdir DFP.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=DFP.buildbin-libdir DFP_1.52.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL DFP_1.52.0.zip && rm DFP_1.52.0.tar.gz DFP_1.52.0.zip
###
##############################################################################
##############################################################################
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
87 212k 87 187k 0 0 498k 0 --:--:-- --:--:-- --:--:-- 498k
100 212k 100 212k 0 0 295k 0 --:--:-- --:--:-- --:--:-- 295k
install for i386
* installing *source* package 'DFP' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'DFP'
finding HTML links ... done
DFP-internal html
DFP-package html
ExpressionLevel-class html
HighExpressionLevel-class html
LowExpressionLevel-class html
MediumExpressionLevel-class html
calculateDiscriminantFuzzyPattern html
calculateFuzzyPatterns html
calculateMembershipFunctions html
discretizeExpressionValues html
discriminantFuzzyPattern html
plotDiscriminantFuzzyPattern html
plotMembershipFunctions html
readCSV html
rmadataset html
show-methods html
showDiscreteValues html
showFuzzyPatterns html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'DFP' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'DFP' as DFP_1.52.0.zip
* DONE (DFP)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'DFP' successfully unpacked and MD5 sums checked
|
DFP.Rcheck/examples_i386/DFP-Ex.timings
|
DFP.Rcheck/examples_x64/DFP-Ex.timings
|