Back to Multiple platform build/check report for BioC 3.14
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This page was generated on 2022-04-13 12:06:23 -0400 (Wed, 13 Apr 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.3 (2022-03-10) -- "One Push-Up" 4324
tokay2Windows Server 2012 R2 Standardx644.1.3 (2022-03-10) -- "One Push-Up" 4077
machv2macOS 10.14.6 Mojavex86_644.1.3 (2022-03-10) -- "One Push-Up" 4137
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD BIN results for CopyNumberPlots on tokay2


To the developers/maintainers of the CopyNumberPlots package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/CopyNumberPlots.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 396/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
CopyNumberPlots 1.10.0  (landing page)
Bernat Gel
Snapshot Date: 2022-04-12 01:55:07 -0400 (Tue, 12 Apr 2022)
git_url: https://git.bioconductor.org/packages/CopyNumberPlots
git_branch: RELEASE_3_14
git_last_commit: 4ab61ef
git_last_commit_date: 2021-10-26 12:51:20 -0400 (Tue, 26 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: CopyNumberPlots
Version: 1.10.0
Command: rm -rf CopyNumberPlots.buildbin-libdir && mkdir CopyNumberPlots.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=CopyNumberPlots.buildbin-libdir CopyNumberPlots_1.10.0.tar.gz
StartedAt: 2022-04-13 05:56:38 -0400 (Wed, 13 Apr 2022)
EndedAt: 2022-04-13 05:57:57 -0400 (Wed, 13 Apr 2022)
EllapsedTime: 78.9 seconds
RetCode: 0
Status:   OK  
PackageFile: CopyNumberPlots_1.10.0.zip
PackageFileSize: 998.7 KiB

Command output

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###
### Running command:
###
###   rm -rf CopyNumberPlots.buildbin-libdir && mkdir CopyNumberPlots.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=CopyNumberPlots.buildbin-libdir CopyNumberPlots_1.10.0.tar.gz
###
##############################################################################
##############################################################################



install for i386

* installing *source* package 'CopyNumberPlots' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'CopyNumberPlots'
    finding HTML links ... done
    EnsemblStyle                            html  
    UCSCStyle                               html  
    Ztree2Hclust                            html  
    colByCopyNumber                         html  
    computeHclustPlotOrder                  html  
    getBAFColumn                            html  
    getChrColumn                            html  
    getColumn                               html  
    getCopyNumberColors                     html  
    getCopyNumberColumn                     html  
    getEndColumn                            html  
    getIDColumn                             html  
    getLOHColumn                            html  
    getLRRColumn                            html  
    getPosColumn                            html  
    getSegmentValueColumn                   html  
    getStartColumn                          html  
    loadCopyNumberCalls                     html  
    loadCopyNumberCallsCNVkit               html  
    loadCopyNumberCallsCnmops               html  
    loadCopyNumberCallsDECoN                html  
    loadCopyNumberCallsDNAcopy              html  
    loadCopyNumberCallsPanelcnmops          html  
    loadCopyNumberCallsSeg                  html  
    loadCopyNumberCallspennCNV              html  
    loadSNPData                             html  
    loadSNPDataDNAcopy                      html  
    loadSNPDataFromVCF                      html  
    plotBAF                                 html  
    finding level-2 HTML links ... done

    plotCopyNumberCalls                     html  
    plotCopyNumberCallsAsLines              html  
    plotCopyNumberSummary                   html  
    plotLRR                                 html  
    plotSingleCellCopyNumberCalls           html  
    plotSingleCellCopyNumberSummary         html  
    prepareLabels                           html  
    readHDF5Ztree                           html  
    removeNAs                               html  
    transformChr                            html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'CopyNumberPlots' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'CopyNumberPlots' as CopyNumberPlots_1.10.0.zip
* DONE (CopyNumberPlots)