Back to Multiple platform build/check report for BioC 3.14 |
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This page was generated on 2022-04-13 12:06:22 -0400 (Wed, 13 Apr 2022).
Hostname | OS | Arch (*) | R version | Installed pkgs |
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nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4324 |
tokay2 | Windows Server 2012 R2 Standard | x64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4077 |
machv2 | macOS 10.14.6 Mojave | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4137 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
To the developers/maintainers of the CONFESS package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/CONFESS.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 384/2083 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
CONFESS 1.22.0 (landing page) Diana LOW
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | WARNINGS | |||||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | OK | |||||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | WARNINGS | OK | |||||||||
Package: CONFESS |
Version: 1.22.0 |
Command: C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:CONFESS.install-out.txt --library=C:\Users\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings CONFESS_1.22.0.tar.gz |
StartedAt: 2022-04-12 17:48:27 -0400 (Tue, 12 Apr 2022) |
EndedAt: 2022-04-12 17:56:22 -0400 (Tue, 12 Apr 2022) |
EllapsedTime: 474.7 seconds |
RetCode: 0 |
Status: WARNINGS |
CheckDir: CONFESS.Rcheck |
Warnings: 1 |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:CONFESS.install-out.txt --library=C:\Users\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings CONFESS_1.22.0.tar.gz ### ############################################################################## ############################################################################## * using log directory 'C:/Users/biocbuild/bbs-3.14-bioc/meat/CONFESS.Rcheck' * using R version 4.1.3 (2022-03-10) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'CONFESS/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'CONFESS' version '1.22.0' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'CONFESS' can be installed ... WARNING Found the following significant warnings: Warning: replacing previous import 'stats::BIC' by 'flowMerge::BIC' when loading 'CONFESS' See 'C:/Users/biocbuild/bbs-3.14-bioc/meat/CONFESS.Rcheck/00install.out' for details. * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in 'vignettes' ... OK * checking examples ... ** running examples for arch 'i386' ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed Fluo_CV_prep 37.10 0.20 37.32 Fluo_adjustment 15.69 0.02 15.71 Fluo_modeling 12.06 0.21 12.28 ** running examples for arch 'x64' ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed Fluo_CV_prep 36.63 0.90 37.57 Fluo_adjustment 17.26 0.11 17.38 Fluo_modeling 14.48 0.81 15.30 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 WARNING See 'C:/Users/biocbuild/bbs-3.14-bioc/meat/CONFESS.Rcheck/00check.log' for details.
CONFESS.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/CONFESS_1.22.0.tar.gz && rm -rf CONFESS.buildbin-libdir && mkdir CONFESS.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=CONFESS.buildbin-libdir CONFESS_1.22.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL CONFESS_1.22.0.zip && rm CONFESS_1.22.0.tar.gz CONFESS_1.22.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 11 1321k 11 151k 0 0 463k 0 0:00:02 --:--:-- 0:00:02 463k 100 1321k 100 1321k 0 0 1054k 0 0:00:01 0:00:01 --:--:-- 1054k install for i386 * installing *source* package 'CONFESS' ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading Warning: replacing previous import 'stats::BIC' by 'flowMerge::BIC' when loading 'CONFESS' ** help *** installing help indices converting help for package 'CONFESS' finding HTML links ... done BGcorrectFluo html BatchFluo html CVsampler html DDHFfit html DDHFinput html FluoInspection html FluoSelection_byRun html Fluo_CV_modeling html Fluo_CV_prep html Fluo_adjustment html Fluo_inspection html Fluo_modeling html Fluo_ordering html GAPanalysis html GrubbsOutliers html LocationMatrix html Results html SpotStats html SpotbyStrLines html addKpredictions html adjustFluo html aveDiff html boxFluo html boxcoxMatrix html boxcoxMatrixEst html caseof0s html caseof1R0G html caseof1R1G html caseof1R2G html caseof2R1G html caseof2R2G html caseof2Rs0G html clu html cluster2outlier html contrastFluo html cpPELT html cpoints html createFluo html cutpointsEstimator html ddhft.np.2 html defineLocClusters html denoisefun html denoiser html despecklefun html diagnoseResiduals html distfromcenter html doTransform html estimate.new.pseudotimes html estimatePath html estimates.2 html estimates html extractBFArea html failurecase html fclust html files html filled.contour3 html findPattern html fixPath html flowclust_step1 html flowclust_step2 html forceBF html function.from.vector html getCoordinates_stats html getCsFAIL html getFluo html getFluo_byRun html getSpot html giveWarning html grouplines html grubbs html highlight.cols html invTransform html isotone html joinAreas html listSorter html lmFluo html mean_signal html measureB html measureF html multiplot html myt html orderFluo html path.initiator html pathEstimator html pathUpdater html plotImages html plot_clusgap html predict.kmeans html processImg html project html readChaImg html readFiles html readOriImg html reestimate.pseudos.byCV html refineMixes html revDDHFinput html signal.from.matrix html significantSignal html simcells html sortCentroids html spot.simulator html spotCenter html spotCoords html spotEstimator html step1 html step2.1 html step2 html step3.1 html step3 html step4 html steps2_4 html straightColLines html straightRowLines html subsetAnalysis html summarizeAdjFluo html transformFluo html trigofun html unnormalizeC01 html updateCentroids html updateCentroidsPaths html which.min.diff html zoomInBF html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location Warning: replacing previous import 'stats::BIC' by 'flowMerge::BIC' when loading 'CONFESS' ** testing if installed package can be loaded from final location Warning: replacing previous import 'stats::BIC' by 'flowMerge::BIC' when loading 'CONFESS' ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'CONFESS' ... ** testing if installed package can be loaded Warning: replacing previous import 'stats::BIC' by 'flowMerge::BIC' when loading 'CONFESS' * MD5 sums packaged installation of 'CONFESS' as CONFESS_1.22.0.zip * DONE (CONFESS) * installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library' package 'CONFESS' successfully unpacked and MD5 sums checked
CONFESS.Rcheck/examples_i386/CONFESS-Ex.timings
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CONFESS.Rcheck/examples_x64/CONFESS-Ex.timings
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