Attila Gabor
| Snapshot Date: 2022-04-12 01:55:07 -0400 (Tue, 12 Apr 2022) |
| git_url: https://git.bioconductor.org/packages/CNORode |
| git_branch: RELEASE_3_14 |
| git_last_commit: e8a9fdc |
| git_last_commit_date: 2021-10-26 12:04:57 -0400 (Tue, 26 Oct 2021) |
| Back to Multiple platform build/check report for BioC 3.14 |
|
This page was generated on 2022-04-13 12:07:48 -0400 (Wed, 13 Apr 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4324 |
| tokay2 | Windows Server 2012 R2 Standard | x64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4077 |
| machv2 | macOS 10.14.6 Mojave | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4137 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the CNORode package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/CNORode.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 354/2083 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| CNORode 1.36.0 (landing page) Attila Gabor
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: CNORode |
| Version: 1.36.0 |
| Command: rm -rf CNORode.buildbin-libdir && mkdir CNORode.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh CNORode_1.36.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R CNORode.buildbin-libdir |
| StartedAt: 2022-04-12 20:30:40 -0400 (Tue, 12 Apr 2022) |
| EndedAt: 2022-04-12 20:31:12 -0400 (Tue, 12 Apr 2022) |
| EllapsedTime: 32.3 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: CNORode_1.36.0.tgz |
| PackageFileSize: 646.5 KiB |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf CNORode.buildbin-libdir && mkdir CNORode.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh CNORode_1.36.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R CNORode.buildbin-libdir ### ############################################################################## ############################################################################## >>>>>>> >>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=CNORode.buildbin-libdir CNORode_1.36.0.tar.gz' >>>>>>> * installing *source* package ‘CNORode’ ... ** using staged installation ** libs clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -I./include -fPIC -Wall -g -O2 -c FG_transfer_function.c -o FG_transfer_function.o clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -I./include -fPIC -Wall -g -O2 -c cvodea.c -o cvodea.o clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -I./include -fPIC -Wall -g -O2 -c cvodea_io.c -o cvodea_io.o clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -I./include -fPIC -Wall -g -O2 -c cvodes.c -o cvodes.o clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -I./include -fPIC -Wall -g -O2 -c cvodes_band.c -o cvodes_band.o clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -I./include -fPIC -Wall -g -O2 -c cvodes_bandpre.c -o cvodes_bandpre.o clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -I./include -fPIC -Wall -g -O2 -c cvodes_bbdpre.c -o cvodes_bbdpre.o clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -I./include -fPIC -Wall -g -O2 -c cvodes_dense.c -o cvodes_dense.o clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -I./include -fPIC -Wall -g -O2 -c cvodes_diag.c -o cvodes_diag.o clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -I./include -fPIC -Wall -g -O2 -c cvodes_direct.c -o cvodes_direct.o clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -I./include -fPIC -Wall -g -O2 -c cvodes_io.c -o cvodes_io.o clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -I./include -fPIC -Wall -g -O2 -c cvodes_spbcgs.c -o cvodes_spbcgs.o clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -I./include -fPIC -Wall -g -O2 -c cvodes_spgmr.c -o cvodes_spgmr.o clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -I./include -fPIC -Wall -g -O2 -c cvodes_spils.c -o cvodes_spils.o clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -I./include -fPIC -Wall -g -O2 -c cvodes_sptfqmr.c -o cvodes_sptfqmr.o clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -I./include -fPIC -Wall -g -O2 -c decimal2binary.c -o decimal2binary.o clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -I./include -fPIC -Wall -g -O2 -c findStates.c -o findStates.o clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -I./include -fPIC -Wall -g -O2 -c fnvector_serial.c -o fnvector_serial.o clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -I./include -fPIC -Wall -g -O2 -c getAdjacencyMatrix.c -o getAdjacencyMatrix.o clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -I./include -fPIC -Wall -g -O2 -c getNumBits.c -o getNumBits.o clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -I./include -fPIC -Wall -g -O2 -c getNumInputs.c -o getNumInputs.o clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -I./include -fPIC -Wall -g -O2 -c getStateIndex.c -o getStateIndex.o clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -I./include -fPIC -Wall -g -O2 -c getTruthTables.c -o getTruthTables.o clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -I./include -fPIC -Wall -g -O2 -c get_count_bits.c -o get_count_bits.o clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -I./include -fPIC -Wall -g -O2 -c get_input_index.c -o get_input_index.o clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -I./include -fPIC -Wall -g -O2 -c get_support_truth_tables.c -o get_support_truth_tables.o clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -I./include -fPIC -Wall -g -O2 -c get_truth_tables_index.c -o get_truth_tables_index.o clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -I./include -fPIC -Wall -g -O2 -c hill_function.c -o hill_function.o clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -I./include -fPIC -Wall -g -O2 -c linear_transfer_function.c -o linear_transfer_function.o clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -I./include -fPIC -Wall -g -O2 -c normHill.c -o normHill.o clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -I./include -fPIC -Wall -g -O2 -c normHill_mod.c -o normHill_mod.o clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -I./include -fPIC -Wall -g -O2 -c nvector_serial.c -o nvector_serial.o clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -I./include -fPIC -Wall -g -O2 -c printAdjMat.c -o printAdjMat.o clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -I./include -fPIC -Wall -g -O2 -c printInterMat.c -o printInterMat.o clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -I./include -fPIC -Wall -g -O2 -c printNminiTerms.c -o printNminiTerms.o clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -I./include -fPIC -Wall -g -O2 -c printTruthTables.c -o printTruthTables.o clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -I./include -fPIC -Wall -g -O2 -c rhsODE.c -o rhsODE.o clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -I./include -fPIC -Wall -g -O2 -c sim_logic_ode.c -o sim_logic_ode.o clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -I./include -fPIC -Wall -g -O2 -c simulateODE.c -o simulateODE.o clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -I./include -fPIC -Wall -g -O2 -c sundials_band.c -o sundials_band.o clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -I./include -fPIC -Wall -g -O2 -c sundials_dense.c -o sundials_dense.o clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -I./include -fPIC -Wall -g -O2 -c sundials_direct.c -o sundials_direct.o clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -I./include -fPIC -Wall -g -O2 -c sundials_iterative.c -o sundials_iterative.o clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -I./include -fPIC -Wall -g -O2 -c sundials_math.c -o sundials_math.o clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -I./include -fPIC -Wall -g -O2 -c sundials_nvector.c -o sundials_nvector.o clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -I./include -fPIC -Wall -g -O2 -c sundials_spbcgs.c -o sundials_spbcgs.o clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -I./include -fPIC -Wall -g -O2 -c sundials_spgmr.c -o sundials_spgmr.o clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -I./include -fPIC -Wall -g -O2 -c sundials_sptfqmr.c -o sundials_sptfqmr.o clang -mmacosx-version-min=10.13 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o CNORode.so FG_transfer_function.o cvodea.o cvodea_io.o cvodes.o cvodes_band.o cvodes_bandpre.o cvodes_bbdpre.o cvodes_dense.o cvodes_diag.o cvodes_direct.o cvodes_io.o cvodes_spbcgs.o cvodes_spgmr.o cvodes_spils.o cvodes_sptfqmr.o decimal2binary.o findStates.o fnvector_serial.o getAdjacencyMatrix.o getNumBits.o getNumInputs.o getStateIndex.o getTruthTables.o get_count_bits.o get_input_index.o get_support_truth_tables.o get_truth_tables_index.o hill_function.o linear_transfer_function.o normHill.o normHill_mod.o nvector_serial.o printAdjMat.o printInterMat.o printNminiTerms.o printTruthTables.o rhsODE.o sim_logic_ode.o simulateODE.o sundials_band.o sundials_dense.o sundials_direct.o sundials_iterative.o sundials_math.o sundials_nvector.o sundials_spbcgs.o sundials_spgmr.o sundials_sptfqmr.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation installing to /Users/biocbuild/bbs-3.14-bioc/meat/CNORode.buildbin-libdir/00LOCK-CNORode/00new/CNORode/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (CNORode) >>>>>>> >>>>>>> FIXING LINKS FOR CNORode.buildbin-libdir/CNORode/libs/CNORode.so >>>>>>> install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libgcc_s.1.dylib" "CNORode.buildbin-libdir/CNORode/libs/CNORode.so" install_name_tool -change "/usr/local/lib/libgfortran.5.dylib" "/Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libgfortran.5.dylib" "CNORode.buildbin-libdir/CNORode/libs/CNORode.so" install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libquadmath.0.dylib" "CNORode.buildbin-libdir/CNORode/libs/CNORode.so"