Back to Multiple platform build/check report for BioC 3.14
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This page was generated on 2022-04-13 12:06:20 -0400 (Wed, 13 Apr 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.3 (2022-03-10) -- "One Push-Up" 4324
tokay2Windows Server 2012 R2 Standardx644.1.3 (2022-03-10) -- "One Push-Up" 4077
machv2macOS 10.14.6 Mojavex86_644.1.3 (2022-03-10) -- "One Push-Up" 4137
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

INSTALL results for CIMICE on tokay2


To the developers/maintainers of the CIMICE package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/CIMICE.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 319/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
CIMICE 1.2.1  (landing page)
Nicolò Rossi
Snapshot Date: 2022-04-12 01:55:07 -0400 (Tue, 12 Apr 2022)
git_url: https://git.bioconductor.org/packages/CIMICE
git_branch: RELEASE_3_14
git_last_commit: 46eaa9d
git_last_commit_date: 2022-03-12 10:03:45 -0400 (Sat, 12 Mar 2022)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: CIMICE
Version: 1.2.1
Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/CIMICE_1.2.1.tar.gz && rm -rf CIMICE.buildbin-libdir && mkdir CIMICE.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=CIMICE.buildbin-libdir CIMICE_1.2.1.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL CIMICE_1.2.1.zip && rm CIMICE_1.2.1.tar.gz CIMICE_1.2.1.zip
StartedAt: 2022-04-12 06:04:48 -0400 (Tue, 12 Apr 2022)
EndedAt: 2022-04-12 06:07:29 -0400 (Tue, 12 Apr 2022)
EllapsedTime: 160.6 seconds
RetCode: 0
Status:   OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/CIMICE_1.2.1.tar.gz && rm -rf CIMICE.buildbin-libdir && mkdir CIMICE.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=CIMICE.buildbin-libdir CIMICE_1.2.1.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL CIMICE_1.2.1.zip && rm CIMICE_1.2.1.tar.gz CIMICE_1.2.1.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
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  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100  500k  100  500k    0     0   888k      0 --:--:-- --:--:-- --:--:--  890k

install for i386

* installing *source* package 'CIMICE' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'CIMICE'
    finding HTML links ... done
    CIMICE                                  html  
    annotate_mutational_matrix              html  
    binary_radix_sort                       html  
    build_subset_graph                      html  
    build_topology_subset                   html  
    chunk_reader                            html  
    compact_dataset                         html  
    computeDWNW                             html  
    computeDWNW_aux                         html  
    computeUPW                              html  
    computeUPW_aux                          html  
    compute_weights_default                 html  
    corrplot_from_mutational_matrix         html  
    corrplot_genes                          html  
    corrplot_samples                        html  
    dataset_preprocessing                   html  
    dataset_preprocessing_population        html  
    draw_ggraph                             html  
    draw_networkD3                          html  
    draw_visNetwork                         html  
    example_dataset                         html  
    example_dataset_withFreqs               html  
    finalize_generator                      html  
    fix_clonal_genotype                     html  
    format_labels                           html  
    gene_mutations_hist                     html  
    get_no_of_children                      html  
    graph_non_transitive_subset_topology    html  
    make_dataset                            html  
    make_generator_stub                     html  
    make_labels                             html  
    normalizeDWNW                           html  
    normalizeUPW                            html  
    perturb_dataset                         html  
    plot_generator                          html  
    prepare_generator_edge_set_command      html  
    prepare_labels                          html  
    quick_run                               html  
    read                                    html  
    read_CAPRI                              html  
    read_CAPRI_string                       html  
    read_CAPRIpop                           html  
    read_CAPRIpop_string                    html  
    read_MAF                                html  
    read_matrix                             html  
    remove_transitive_edges                 html  
    sample_mutations_hist                   html  
    select_genes_on_mutations               html  
    select_samples_on_mutations             html  
    set_generator_edges                     html  
    simulate_generator                      html  
    to_dot                                  html  
    update_df                               html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'CIMICE' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'CIMICE' as CIMICE_1.2.1.zip
* DONE (CIMICE)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'CIMICE' successfully unpacked and MD5 sums checked