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###
### Running command:
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### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL pqsfinder
###
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* installing to library ‘/Library/Frameworks/R.framework/Versions/4.0/Resources/library’
* installing *source* package ‘pqsfinder’ ...
** using staged installation
** libs
clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/BH/include' -I/usr/local/include -fPIC -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o
In file included from RcppExports.cpp:4:
In file included from /Library/Frameworks/R.framework/Versions/4.0/Resources/library/Rcpp/include/Rcpp.h:57:
/Library/Frameworks/R.framework/Versions/4.0/Resources/library/Rcpp/include/Rcpp/DataFrame.h:136:18: warning: unused variable 'data' [-Wunused-variable]
SEXP data = Parent::get__();
^
1 warning generated.
clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/BH/include' -I/usr/local/include -fPIC -Wall -g -O2 -c pqsfinder.cpp -o pqsfinder.o
In file included from pqsfinder.cpp:13:
In file included from /Library/Frameworks/R.framework/Versions/4.0/Resources/library/Rcpp/include/Rcpp.h:57:
/Library/Frameworks/R.framework/Versions/4.0/Resources/library/Rcpp/include/Rcpp/DataFrame.h:136:18: warning: unused variable 'data' [-Wunused-variable]
SEXP data = Parent::get__();
^
In file included from pqsfinder.cpp:22:
In file included from /Library/Frameworks/R.framework/Versions/4.0/Resources/library/BH/include/boost/regex.hpp:31:
In file included from /Library/Frameworks/R.framework/Versions/4.0/Resources/library/BH/include/boost/regex/v4/regex.hpp:32:
In file included from /Library/Frameworks/R.framework/Versions/4.0/Resources/library/BH/include/boost/regex/v4/regex_workaround.hpp:42:
In file included from /Library/Frameworks/R.framework/Versions/4.0/Resources/library/BH/include/boost/scoped_ptr.hpp:13:
/Library/Frameworks/R.framework/Versions/4.0/Resources/library/BH/include/boost/smart_ptr/scoped_ptr.hpp:74:31: warning: 'auto_ptr<boost::match_results<std::__1::__wrap_iter<const char *>, std::__1::allocator<boost::sub_match<std::__1::__wrap_iter<const char *> > > > >' is deprecated [-Wdeprecated-declarations]
explicit scoped_ptr( std::auto_ptr<T> p ) BOOST_SP_NOEXCEPT : px( p.release() )
^
/Library/Frameworks/R.framework/Versions/4.0/Resources/library/BH/include/boost/regex/v4/perl_matcher.hpp:477:56: note: in instantiation of template class 'boost::scoped_ptr<boost::match_results<std::__1::__wrap_iter<const char *>, std::__1::allocator<boost::sub_match<std::__1::__wrap_iter<const char *> > > > >' requested here
scoped_ptr<match_results<BidiIterator, Allocator> > m_temp_match;
^
/Library/Frameworks/R.framework/Versions/4.0/Resources/library/BH/include/boost/regex/v4/regex_search.hpp:55:73: note: in instantiation of template class 'boost::re_detail_107500::perl_matcher<std::__1::__wrap_iter<const char *>, std::__1::allocator<boost::sub_match<std::__1::__wrap_iter<const char *> > >, boost::regex_traits<char, boost::cpp_regex_traits<char> > >' requested here
BOOST_REGEX_DETAIL_NS::perl_matcher<BidiIterator, Allocator, traits> matcher(first, last, m, e, flags, base);
^
/Library/Frameworks/R.framework/Versions/4.0/Resources/library/BH/include/boost/regex/v4/regex_search.hpp:42:11: note: in instantiation of function template specialization 'boost::regex_search<std::__1::__wrap_iter<const char *>, std::__1::allocator<boost::sub_match<std::__1::__wrap_iter<const char *> > >, char, boost::regex_traits<char, boost::cpp_regex_traits<char> > >' requested here
return regex_search(first, last, m, e, flags, first);
^
pqsfinder.cpp:298:19: note: in instantiation of function template specialization 'boost::regex_search<std::__1::__wrap_iter<const char *>, std::__1::allocator<boost::sub_match<std::__1::__wrap_iter<const char *> > >, char, boost::regex_traits<char, boost::cpp_regex_traits<char> > >' requested here
return boost::regex_search(start, end, boost_m, run_re_c, boost::match_default);
^
/Library/Developer/CommandLineTools/usr/bin/../include/c++/v1/memory:2080:28: note: 'auto_ptr<boost::match_results<std::__1::__wrap_iter<const char *>, std::__1::allocator<boost::sub_match<std::__1::__wrap_iter<const char *> > > > >' has been explicitly marked deprecated here
class _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX11 auto_ptr
^
/Library/Developer/CommandLineTools/usr/bin/../include/c++/v1/__config:1101:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11'
# define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED
^
/Library/Developer/CommandLineTools/usr/bin/../include/c++/v1/__config:1090:48: note: expanded from macro '_LIBCPP_DEPRECATED'
# define _LIBCPP_DEPRECATED __attribute__ ((deprecated))
^
2 warnings generated.
clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/BH/include' -I/usr/local/include -fPIC -Wall -g -O2 -c boost_regex/c_regex_traits.cpp -o boost_regex/c_regex_traits.o
clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/BH/include' -I/usr/local/include -fPIC -Wall -g -O2 -c boost_regex/cpp_regex_traits.cpp -o boost_regex/cpp_regex_traits.o
clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/BH/include' -I/usr/local/include -fPIC -Wall -g -O2 -c boost_regex/cregex.cpp -o boost_regex/cregex.o
In file included from boost_regex/cregex.cpp:22:
In file included from /Library/Frameworks/R.framework/Versions/4.0/Resources/library/BH/include/boost/regex.hpp:31:
In file included from /Library/Frameworks/R.framework/Versions/4.0/Resources/library/BH/include/boost/regex/v4/regex.hpp:32:
In file included from /Library/Frameworks/R.framework/Versions/4.0/Resources/library/BH/include/boost/regex/v4/regex_workaround.hpp:42:
In file included from /Library/Frameworks/R.framework/Versions/4.0/Resources/library/BH/include/boost/scoped_ptr.hpp:13:
/Library/Frameworks/R.framework/Versions/4.0/Resources/library/BH/include/boost/smart_ptr/scoped_ptr.hpp:74:31: warning: 'auto_ptr<boost::match_results<const char *, std::__1::allocator<boost::sub_match<const char *> > > >' is deprecated [-Wdeprecated-declarations]
explicit scoped_ptr( std::auto_ptr<T> p ) BOOST_SP_NOEXCEPT : px( p.release() )
^
/Library/Frameworks/R.framework/Versions/4.0/Resources/library/BH/include/boost/regex/v4/perl_matcher.hpp:477:56: note: in instantiation of template class 'boost::scoped_ptr<boost::match_results<const char *, std::__1::allocator<boost::sub_match<const char *> > > >' requested here
scoped_ptr<match_results<BidiIterator, Allocator> > m_temp_match;
^
/Library/Frameworks/R.framework/Versions/4.0/Resources/library/BH/include/boost/regex/v4/regex_match.hpp:49:73: note: in instantiation of template class 'boost::re_detail_107500::perl_matcher<const char *, std::__1::allocator<boost::sub_match<const char *> >, boost::regex_traits<char, boost::cpp_regex_traits<char> > >' requested here
BOOST_REGEX_DETAIL_NS::perl_matcher<BidiIterator, Allocator, traits> matcher(first, last, m, e, flags, first);
^
boost_regex/cregex.cpp:208:7: note: in instantiation of function template specialization 'boost::regex_match<const char *, std::__1::allocator<boost::sub_match<const char *> >, char, boost::regex_traits<char, boost::cpp_regex_traits<char> > >' requested here
if(regex_match(p, end, pdata->m, pdata->e, flags))
^
/Library/Developer/CommandLineTools/usr/bin/../include/c++/v1/memory:2080:28: note: 'auto_ptr<boost::match_results<const char *, std::__1::allocator<boost::sub_match<const char *> > > >' has been explicitly marked deprecated here
class _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX11 auto_ptr
^
/Library/Developer/CommandLineTools/usr/bin/../include/c++/v1/__config:1101:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11'
# define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED
^
/Library/Developer/CommandLineTools/usr/bin/../include/c++/v1/__config:1090:48: note: expanded from macro '_LIBCPP_DEPRECATED'
# define _LIBCPP_DEPRECATED __attribute__ ((deprecated))
^
In file included from boost_regex/cregex.cpp:22:
In file included from /Library/Frameworks/R.framework/Versions/4.0/Resources/library/BH/include/boost/regex.hpp:31:
In file included from /Library/Frameworks/R.framework/Versions/4.0/Resources/library/BH/include/boost/regex/v4/regex.hpp:32:
In file included from /Library/Frameworks/R.framework/Versions/4.0/Resources/library/BH/include/boost/regex/v4/regex_workaround.hpp:42:
In file included from /Library/Frameworks/R.framework/Versions/4.0/Resources/library/BH/include/boost/scoped_ptr.hpp:13:
/Library/Frameworks/R.framework/Versions/4.0/Resources/library/BH/include/boost/smart_ptr/scoped_ptr.hpp:74:31: warning: 'auto_ptr<boost::match_results<boost::re_detail_107500::mapfile_iterator, std::__1::allocator<boost::sub_match<boost::re_detail_107500::mapfile_iterator> > > >' is deprecated [-Wdeprecated-declarations]
explicit scoped_ptr( std::auto_ptr<T> p ) BOOST_SP_NOEXCEPT : px( p.release() )
^
/Library/Frameworks/R.framework/Versions/4.0/Resources/library/BH/include/boost/regex/v4/perl_matcher.hpp:477:56: note: in instantiation of template class 'boost::scoped_ptr<boost::match_results<boost::re_detail_107500::mapfile_iterator, std::__1::allocator<boost::sub_match<boost::re_detail_107500::mapfile_iterator> > > >' requested here
scoped_ptr<match_results<BidiIterator, Allocator> > m_temp_match;
^
/Library/Frameworks/R.framework/Versions/4.0/Resources/library/BH/include/boost/regex/v4/regex_grep.hpp:53:84: note: in instantiation of template class 'boost::re_detail_107500::perl_matcher<boost::re_detail_107500::mapfile_iterator, std::__1::allocator<boost::sub_match<boost::re_detail_107500::mapfile_iterator> >, boost::regex_traits<char, boost::cpp_regex_traits<char> > >' requested here
BOOST_REGEX_DETAIL_NS::perl_matcher<BidiIterator, match_allocator_type, traits> matcher(first, last, m, e, flags, first);
^
boost_regex/cregex.cpp:409:15: note: in instantiation of function template specialization 'boost::regex_grep<boost::re_detail_107500::pred4, boost::re_detail_107500::mapfile_iterator, char, boost::regex_traits<char, boost::cpp_regex_traits<char> > >' requested here
int r = regex_grep(pred, map.begin(), map.end(), pdata->e, flags);
^
/Library/Developer/CommandLineTools/usr/bin/../include/c++/v1/memory:2080:28: note: 'auto_ptr<boost::match_results<boost::re_detail_107500::mapfile_iterator, std::__1::allocator<boost::sub_match<boost::re_detail_107500::mapfile_iterator> > > >' has been explicitly marked deprecated here
class _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX11 auto_ptr
^
/Library/Developer/CommandLineTools/usr/bin/../include/c++/v1/__config:1101:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11'
# define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED
^
/Library/Developer/CommandLineTools/usr/bin/../include/c++/v1/__config:1090:48: note: expanded from macro '_LIBCPP_DEPRECATED'
# define _LIBCPP_DEPRECATED __attribute__ ((deprecated))
^
In file included from boost_regex/cregex.cpp:22:
In file included from /Library/Frameworks/R.framework/Versions/4.0/Resources/library/BH/include/boost/regex.hpp:31:
In file included from /Library/Frameworks/R.framework/Versions/4.0/Resources/library/BH/include/boost/regex/v4/regex.hpp:32:
In file included from /Library/Frameworks/R.framework/Versions/4.0/Resources/library/BH/include/boost/regex/v4/regex_workaround.hpp:42:
In file included from /Library/Frameworks/R.framework/Versions/4.0/Resources/library/BH/include/boost/scoped_ptr.hpp:13:
/Library/Frameworks/R.framework/Versions/4.0/Resources/library/BH/include/boost/smart_ptr/scoped_ptr.hpp:74:31: warning: 'auto_ptr<boost::match_results<std::__1::__wrap_iter<const char *>, std::__1::allocator<boost::sub_match<std::__1::__wrap_iter<const char *> > > > >' is deprecated [-Wdeprecated-declarations]
explicit scoped_ptr( std::auto_ptr<T> p ) BOOST_SP_NOEXCEPT : px( p.release() )
^
/Library/Frameworks/R.framework/Versions/4.0/Resources/library/BH/include/boost/regex/v4/perl_matcher.hpp:477:56: note: in instantiation of template class 'boost::scoped_ptr<boost::match_results<std::__1::__wrap_iter<const char *>, std::__1::allocator<boost::sub_match<std::__1::__wrap_iter<const char *> > > > >' requested here
scoped_ptr<match_results<BidiIterator, Allocator> > m_temp_match;
^
/Library/Frameworks/R.framework/Versions/4.0/Resources/library/BH/include/boost/regex/v4/regex_search.hpp:55:73: note: in instantiation of template class 'boost::re_detail_107500::perl_matcher<std::__1::__wrap_iter<const char *>, std::__1::allocator<boost::sub_match<std::__1::__wrap_iter<const char *> > >, boost::regex_traits<char, boost::cpp_regex_traits<char> > >' requested here
BOOST_REGEX_DETAIL_NS::perl_matcher<BidiIterator, Allocator, traits> matcher(first, last, m, e, flags, base);
^
/Library/Frameworks/R.framework/Versions/4.0/Resources/library/BH/include/boost/regex/v4/regex_search.hpp:42:11: note: in instantiation of function template specialization 'boost::regex_search<std::__1::__wrap_iter<const char *>, std::__1::allocator<boost::sub_match<std::__1::__wrap_iter<const char *> > >, char, boost::regex_traits<char, boost::cpp_regex_traits<char> > >' requested here
return regex_search(first, last, m, e, flags, first);
^
/Library/Frameworks/R.framework/Versions/4.0/Resources/library/BH/include/boost/regex/v4/regex_iterator.hpp:58:14: note: in instantiation of function template specialization 'boost::regex_search<std::__1::__wrap_iter<const char *>, std::__1::allocator<boost::sub_match<std::__1::__wrap_iter<const char *> > >, char, boost::regex_traits<char, boost::cpp_regex_traits<char> > >' requested here
return regex_search(first, end, what, re, flags);
^
/Library/Frameworks/R.framework/Versions/4.0/Resources/library/BH/include/boost/regex/v4/regex_iterator.hpp:109:18: note: in instantiation of member function 'boost::regex_iterator_implementation<std::__1::__wrap_iter<const char *>, char, boost::regex_traits<char, boost::cpp_regex_traits<char> > >::init' requested here
if(!pdata->init(a))
^
/Library/Frameworks/R.framework/Versions/4.0/Resources/library/BH/include/boost/regex/v4/regex_replace.hpp:46:57: note: in instantiation of member function 'boost::regex_iterator<std::__1::__wrap_iter<const char *>, char, boost::regex_traits<char, boost::cpp_regex_traits<char> > >::regex_iterator' requested here
regex_iterator<BidirectionalIterator, charT, traits> i(first, last, e, flags);
^
boost_regex/cregex.cpp:461:4: note: in instantiation of function template specialization 'boost::regex_replace<boost::re_detail_107500::string_out_iterator<std::__1::basic_string<char> >, std::__1::__wrap_iter<const char *>, boost::regex_traits<char, boost::cpp_regex_traits<char> >, char, const char *>' requested here
regex_replace(i, in.begin(), in.end(), pdata->e, fmt.c_str(), flags);
^
/Library/Developer/CommandLineTools/usr/bin/../include/c++/v1/memory:2080:28: note: 'auto_ptr<boost::match_results<std::__1::__wrap_iter<const char *>, std::__1::allocator<boost::sub_match<std::__1::__wrap_iter<const char *> > > > >' has been explicitly marked deprecated here
class _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX11 auto_ptr
^
/Library/Developer/CommandLineTools/usr/bin/../include/c++/v1/__config:1101:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11'
# define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED
^
/Library/Developer/CommandLineTools/usr/bin/../include/c++/v1/__config:1090:48: note: expanded from macro '_LIBCPP_DEPRECATED'
# define _LIBCPP_DEPRECATED __attribute__ ((deprecated))
^
3 warnings generated.
clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/BH/include' -I/usr/local/include -fPIC -Wall -g -O2 -c boost_regex/fileiter.cpp -o boost_regex/fileiter.o
clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/BH/include' -I/usr/local/include -fPIC -Wall -g -O2 -c boost_regex/icu.cpp -o boost_regex/icu.o
clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/BH/include' -I/usr/local/include -fPIC -Wall -g -O2 -c boost_regex/instances.cpp -o boost_regex/instances.o
clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/BH/include' -I/usr/local/include -fPIC -Wall -g -O2 -c boost_regex/posix_api.cpp -o boost_regex/posix_api.o
In file included from boost_regex/posix_api.cpp:23:
In file included from /Library/Frameworks/R.framework/Versions/4.0/Resources/library/BH/include/boost/regex.hpp:31:
In file included from /Library/Frameworks/R.framework/Versions/4.0/Resources/library/BH/include/boost/regex/v4/regex.hpp:32:
In file included from /Library/Frameworks/R.framework/Versions/4.0/Resources/library/BH/include/boost/regex/v4/regex_workaround.hpp:42:
In file included from /Library/Frameworks/R.framework/Versions/4.0/Resources/library/BH/include/boost/scoped_ptr.hpp:13:
/Library/Frameworks/R.framework/Versions/4.0/Resources/library/BH/include/boost/smart_ptr/scoped_ptr.hpp:74:31: warning: 'auto_ptr<boost::match_results<const char *, std::__1::allocator<boost::sub_match<const char *> > > >' is deprecated [-Wdeprecated-declarations]
explicit scoped_ptr( std::auto_ptr<T> p ) BOOST_SP_NOEXCEPT : px( p.release() )
^
/Library/Frameworks/R.framework/Versions/4.0/Resources/library/BH/include/boost/regex/v4/perl_matcher.hpp:477:56: note: in instantiation of template class 'boost::scoped_ptr<boost::match_results<const char *, std::__1::allocator<boost::sub_match<const char *> > > >' requested here
scoped_ptr<match_results<BidiIterator, Allocator> > m_temp_match;
^
/Library/Frameworks/R.framework/Versions/4.0/Resources/library/BH/include/boost/regex/v4/regex_search.hpp:55:73: note: in instantiation of template class 'boost::re_detail_107500::perl_matcher<const char *, std::__1::allocator<boost::sub_match<const char *> >, boost::c_regex_traits<char> >' requested here
BOOST_REGEX_DETAIL_NS::perl_matcher<BidiIterator, Allocator, traits> matcher(first, last, m, e, flags, base);
^
/Library/Frameworks/R.framework/Versions/4.0/Resources/library/BH/include/boost/regex/v4/regex_search.hpp:42:11: note: in instantiation of function template specialization 'boost::regex_search<const char *, std::__1::allocator<boost::sub_match<const char *> >, char, boost::c_regex_traits<char> >' requested here
return regex_search(first, last, m, e, flags, first);
^
boost_regex/posix_api.cpp:248:16: note: in instantiation of function template specialization 'boost::regex_search<const char *, std::__1::allocator<boost::sub_match<const char *> >, char, boost::c_regex_traits<char> >' requested here
result = regex_search(start, end, m, *static_cast<c_regex_type*>(expression->guts), flags);
^
/Library/Developer/CommandLineTools/usr/bin/../include/c++/v1/memory:2080:28: note: 'auto_ptr<boost::match_results<const char *, std::__1::allocator<boost::sub_match<const char *> > > >' has been explicitly marked deprecated here
class _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX11 auto_ptr
^
/Library/Developer/CommandLineTools/usr/bin/../include/c++/v1/__config:1101:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11'
# define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED
^
/Library/Developer/CommandLineTools/usr/bin/../include/c++/v1/__config:1090:48: note: expanded from macro '_LIBCPP_DEPRECATED'
# define _LIBCPP_DEPRECATED __attribute__ ((deprecated))
^
1 warning generated.
clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/BH/include' -I/usr/local/include -fPIC -Wall -g -O2 -c boost_regex/regex.cpp -o boost_regex/regex.o
clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/BH/include' -I/usr/local/include -fPIC -Wall -g -O2 -c boost_regex/regex_debug.cpp -o boost_regex/regex_debug.o
clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/BH/include' -I/usr/local/include -fPIC -Wall -g -O2 -c boost_regex/regex_raw_buffer.cpp -o boost_regex/regex_raw_buffer.o
clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/BH/include' -I/usr/local/include -fPIC -Wall -g -O2 -c boost_regex/regex_traits_defaults.cpp -o boost_regex/regex_traits_defaults.o
clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/BH/include' -I/usr/local/include -fPIC -Wall -g -O2 -c boost_regex/static_mutex.cpp -o boost_regex/static_mutex.o
clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/BH/include' -I/usr/local/include -fPIC -Wall -g -O2 -c boost_regex/usinstances.cpp -o boost_regex/usinstances.o
clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/BH/include' -I/usr/local/include -fPIC -Wall -g -O2 -c boost_regex/w32_regex_traits.cpp -o boost_regex/w32_regex_traits.o
clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/BH/include' -I/usr/local/include -fPIC -Wall -g -O2 -c boost_regex/wc_regex_traits.cpp -o boost_regex/wc_regex_traits.o
clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/BH/include' -I/usr/local/include -fPIC -Wall -g -O2 -c boost_regex/wide_posix_api.cpp -o boost_regex/wide_posix_api.o
In file included from boost_regex/wide_posix_api.cpp:25:
In file included from /Library/Frameworks/R.framework/Versions/4.0/Resources/library/BH/include/boost/regex.hpp:31:
In file included from /Library/Frameworks/R.framework/Versions/4.0/Resources/library/BH/include/boost/regex/v4/regex.hpp:32:
In file included from /Library/Frameworks/R.framework/Versions/4.0/Resources/library/BH/include/boost/regex/v4/regex_workaround.hpp:42:
In file included from /Library/Frameworks/R.framework/Versions/4.0/Resources/library/BH/include/boost/scoped_ptr.hpp:13:
/Library/Frameworks/R.framework/Versions/4.0/Resources/library/BH/include/boost/smart_ptr/scoped_ptr.hpp:74:31: warning: 'auto_ptr<boost::match_results<const wchar_t *, std::__1::allocator<boost::sub_match<const wchar_t *> > > >' is deprecated [-Wdeprecated-declarations]
explicit scoped_ptr( std::auto_ptr<T> p ) BOOST_SP_NOEXCEPT : px( p.release() )
^
/Library/Frameworks/R.framework/Versions/4.0/Resources/library/BH/include/boost/regex/v4/perl_matcher.hpp:477:56: note: in instantiation of template class 'boost::scoped_ptr<boost::match_results<const wchar_t *, std::__1::allocator<boost::sub_match<const wchar_t *> > > >' requested here
scoped_ptr<match_results<BidiIterator, Allocator> > m_temp_match;
^
/Library/Frameworks/R.framework/Versions/4.0/Resources/library/BH/include/boost/regex/v4/regex_search.hpp:55:73: note: in instantiation of template class 'boost::re_detail_107500::perl_matcher<const wchar_t *, std::__1::allocator<boost::sub_match<const wchar_t *> >, boost::c_regex_traits<wchar_t> >' requested here
BOOST_REGEX_DETAIL_NS::perl_matcher<BidiIterator, Allocator, traits> matcher(first, last, m, e, flags, base);
^
/Library/Frameworks/R.framework/Versions/4.0/Resources/library/BH/include/boost/regex/v4/regex_search.hpp:42:11: note: in instantiation of function template specialization 'boost::regex_search<const wchar_t *, std::__1::allocator<boost::sub_match<const wchar_t *> >, wchar_t, boost::c_regex_traits<wchar_t> >' requested here
return regex_search(first, last, m, e, flags, first);
^
boost_regex/wide_posix_api.cpp:264:16: note: in instantiation of function template specialization 'boost::regex_search<const wchar_t *, std::__1::allocator<boost::sub_match<const wchar_t *> >, wchar_t, boost::c_regex_traits<wchar_t> >' requested here
result = regex_search(start, end, m, *static_cast<wc_regex_type*>(expression->guts), flags);
^
/Library/Developer/CommandLineTools/usr/bin/../include/c++/v1/memory:2080:28: note: 'auto_ptr<boost::match_results<const wchar_t *, std::__1::allocator<boost::sub_match<const wchar_t *> > > >' has been explicitly marked deprecated here
class _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX11 auto_ptr
^
/Library/Developer/CommandLineTools/usr/bin/../include/c++/v1/__config:1101:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11'
# define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED
^
/Library/Developer/CommandLineTools/usr/bin/../include/c++/v1/__config:1090:48: note: expanded from macro '_LIBCPP_DEPRECATED'
# define _LIBCPP_DEPRECATED __attribute__ ((deprecated))
^
1 warning generated.
clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.0/Resources/library/BH/include' -I/usr/local/include -fPIC -Wall -g -O2 -c boost_regex/winstances.cpp -o boost_regex/winstances.o
mkdir -p "/Library/Frameworks/R.framework/Versions/4.0/Resources/library/00LOCK-pqsfinder/00new/pqsfinder/lib"
ar rs "/Library/Frameworks/R.framework/Versions/4.0/Resources/library/00LOCK-pqsfinder/00new/pqsfinder/lib/libboost_regex.a" boost_regex/c_regex_traits.o boost_regex/cpp_regex_traits.o boost_regex/cregex.o boost_regex/fileiter.o boost_regex/icu.o boost_regex/instances.o boost_regex/posix_api.o boost_regex/regex.o boost_regex/regex_debug.o boost_regex/regex_raw_buffer.o boost_regex/regex_traits_defaults.o boost_regex/static_mutex.o boost_regex/usinstances.o boost_regex/w32_regex_traits.o boost_regex/wc_regex_traits.o boost_regex/wide_posix_api.o boost_regex/winstances.o
ar: creating archive /Library/Frameworks/R.framework/Versions/4.0/Resources/library/00LOCK-pqsfinder/00new/pqsfinder/lib/libboost_regex.a
/Library/Developer/CommandLineTools/usr/bin/ranlib: file: /Library/Frameworks/R.framework/Versions/4.0/Resources/library/00LOCK-pqsfinder/00new/pqsfinder/lib/libboost_regex.a(icu.o) has no symbols
/Library/Developer/CommandLineTools/usr/bin/ranlib: file: /Library/Frameworks/R.framework/Versions/4.0/Resources/library/00LOCK-pqsfinder/00new/pqsfinder/lib/libboost_regex.a(instances.o) has no symbols
/Library/Developer/CommandLineTools/usr/bin/ranlib: file: /Library/Frameworks/R.framework/Versions/4.0/Resources/library/00LOCK-pqsfinder/00new/pqsfinder/lib/libboost_regex.a(regex_debug.o) has no symbols
/Library/Developer/CommandLineTools/usr/bin/ranlib: file: /Library/Frameworks/R.framework/Versions/4.0/Resources/library/00LOCK-pqsfinder/00new/pqsfinder/lib/libboost_regex.a(usinstances.o) has no symbols
/Library/Developer/CommandLineTools/usr/bin/ranlib: file: /Library/Frameworks/R.framework/Versions/4.0/Resources/library/00LOCK-pqsfinder/00new/pqsfinder/lib/libboost_regex.a(w32_regex_traits.o) has no symbols
/Library/Developer/CommandLineTools/usr/bin/ranlib: file: /Library/Frameworks/R.framework/Versions/4.0/Resources/library/00LOCK-pqsfinder/00new/pqsfinder/lib/libboost_regex.a(winstances.o) has no symbols
clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o pqsfinder.so RcppExports.o pqsfinder.o /Library/Frameworks/R.framework/Versions/4.0/Resources/library/00LOCK-pqsfinder/00new/pqsfinder/lib/libboost_regex.a -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Library/Frameworks/R.framework/Versions/4.0/Resources/library/00LOCK-pqsfinder/00new/pqsfinder/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (pqsfinder)
