| Back to Multiple platform build/check report for BioC 3.12 |
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This page was generated on 2021-05-06 12:32:39 -0400 (Thu, 06 May 2021).
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To the developers/maintainers of the OrganismDbi package: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1280/1974 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| OrganismDbi 1.32.0 (landing page) Bioconductor Package Maintainer
| malbec1 | Linux (Ubuntu 18.04.5 LTS) / x86_64 | OK | OK | WARNINGS |  | ||||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | OK | | ||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | WARNINGS | OK | | ||||||||
| Package: OrganismDbi |
| Version: 1.32.0 |
| Command: C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/OrganismDbi_1.32.0.tar.gz && rm -rf OrganismDbi.buildbin-libdir && mkdir OrganismDbi.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=OrganismDbi.buildbin-libdir OrganismDbi_1.32.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL OrganismDbi_1.32.0.zip && rm OrganismDbi_1.32.0.tar.gz OrganismDbi_1.32.0.zip |
| StartedAt: 2021-05-05 17:58:37 -0400 (Wed, 05 May 2021) |
| EndedAt: 2021-05-05 17:59:45 -0400 (Wed, 05 May 2021) |
| EllapsedTime: 68.7 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/OrganismDbi_1.32.0.tar.gz && rm -rf OrganismDbi.buildbin-libdir && mkdir OrganismDbi.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=OrganismDbi.buildbin-libdir OrganismDbi_1.32.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL OrganismDbi_1.32.0.zip && rm OrganismDbi_1.32.0.tar.gz OrganismDbi_1.32.0.zip
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install for i386
* installing *source* package 'OrganismDbi' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'OrganismDbi'
finding HTML links ... done
OrganismDb html
finding level-2 HTML links ... done
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpkBb3re/R.INSTALL1e30659f698b/OrganismDbi/man/OrganismDb.Rd:191: missing link 'GenomeInfoDb'
coordinate-mapping-method html
makeOrganismDbFromBiomart html
makeOrganismDbFromTxDb html
makeOrganismDbFromUCSC html
makeOrganismPackage html
rangeBasedAccessors html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'OrganismDbi' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'OrganismDbi' as OrganismDbi_1.32.0.zip
* DONE (OrganismDbi)
* installing to library 'C:/Users/biocbuild/bbs-3.12-bioc/R/library'
package 'OrganismDbi' successfully unpacked and MD5 sums checked