Back to Build/check report for BioC 3.11 experimental data |
This page was generated on 2020-10-15 20:46:01 -0400 (Thu, 15 Oct 2020).
TO THE DEVELOPERS/MAINTAINERS OF THE synapterdata PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 354/391 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | ||||||
synapterdata 1.26.0 Laurent Gatto
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | [ OK ] |
Package: synapterdata |
Version: 1.26.0 |
Command: /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD check --install=check:synapterdata.install-out.txt --library=/home/biocbuild/bbs-3.11-bioc/R/library --no-vignettes --timings synapterdata_1.26.0.tar.gz |
StartedAt: 2020-10-15 14:14:24 -0400 (Thu, 15 Oct 2020) |
EndedAt: 2020-10-15 14:18:45 -0400 (Thu, 15 Oct 2020) |
EllapsedTime: 261.1 seconds |
RetCode: 0 |
Status: OK |
CheckDir: synapterdata.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD check --install=check:synapterdata.install-out.txt --library=/home/biocbuild/bbs-3.11-bioc/R/library --no-vignettes --timings synapterdata_1.26.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.11-data-experiment/meat/synapterdata.Rcheck’ * using R version 4.0.3 (2020-10-10) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘synapterdata/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘synapterdata’ version ‘1.26.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘synapterdata’ can be installed ... OK * checking installed package size ... NOTE installed size is 422.5Mb sub-directories of 1Mb or more: data 28.0Mb extdata 394.4Mb * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking examples ... OK * checking PDF version of manual ... OK * DONE Status: 1 NOTE See ‘/home/biocbuild/bbs-3.11-data-experiment/meat/synapterdata.Rcheck/00check.log’ for details.
synapterdata.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD INSTALL synapterdata ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.11-bioc/R/library’ * installing *source* package ‘synapterdata’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (synapterdata)
synapterdata.Rcheck/synapterdata-Ex.timings
name | user | system | elapsed | |
getHDMSeFinalPeptide | 0.001 | 0.000 | 0.001 | |
getMasterRds | 0.122 | 0.000 | 0.167 | |
synobj2 | 2.790 | 0.052 | 2.842 | |
ups25a | 0.711 | 0.036 | 0.747 | |