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BUILD report for RNAinteractMAPK on malbec2

This page was generated on 2020-10-15 20:45:58 -0400 (Thu, 15 Oct 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE RNAinteractMAPK PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 304/391HostnameOS / ArchINSTALLBUILDCHECK
RNAinteractMAPK 1.26.0
Bernd Fischer
Snapshot Date: 2020-10-15 07:30:17 -0400 (Thu, 15 Oct 2020)
URL: https://git.bioconductor.org/packages/RNAinteractMAPK
Branch: RELEASE_3_11
Last Commit: 3d33804
Last Changed Date: 2020-04-27 15:04:31 -0400 (Mon, 27 Apr 2020)
malbec2 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK [ ERROR ] skipped 

Summary

Package: RNAinteractMAPK
Version: 1.26.0
Command: /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data RNAinteractMAPK
StartedAt: 2020-10-15 12:19:53 -0400 (Thu, 15 Oct 2020)
EndedAt: 2020-10-15 12:23:40 -0400 (Thu, 15 Oct 2020)
EllapsedTime: 227.3 seconds
RetCode: 1
Status:  ERROR 
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data RNAinteractMAPK
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* checking for file ‘RNAinteractMAPK/DESCRIPTION’ ... OK
* preparing ‘RNAinteractMAPK’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘RNAinteractMAPK.Rnw’ using Sweave
Loading required package: fields
Loading required package: spam
Loading required package: dotCall64
Loading required package: grid
Spam version 2.5-1 (2019-12-12) is loaded.
Type 'help( Spam)' or 'demo( spam)' for a short introduction 
and overview of this package.
Help for individual functions is also obtained by adding the
suffix '.spam' to the function name, e.g. 'help( chol.spam)'.

Attaching package: ‘spam’

The following objects are masked from ‘package:base’:

    backsolve, forwardsolve

See https://github.com/NCAR/Fields for
 an extensive vignette, other supplements and source code 
Loading required package: sparseLDA
Loading required package: RNAinteract
Loading required package: abind
Loading required package: locfit
locfit 1.5-9.4 	 2020-03-24
Loading required package: Biobase
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: ‘BiocGenerics’

The following objects are masked from ‘package:parallel’:

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following object is masked from ‘package:sparseLDA’:

    normalize

The following objects are masked from ‘package:spam’:

    cbind, rbind

The following objects are masked from ‘package:stats’:

    IQR, mad, sd, var, xtabs

The following objects are masked from ‘package:base’:

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, basename, cbind, colnames, dirname, do.call,
    duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
    lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
    pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
    tapply, union, unique, unsplit, which, which.max, which.min

Welcome to Bioconductor

    Vignettes contain introductory material; view with
    'browseVignettes()'. To cite Bioconductor, see
    'citation("Biobase")', and for packages 'citation("pkgname")'.

Registered S3 method overwritten by 'gdata':
  method         from  
  reorder.factor gplots
It looks like 384-well plates are used. nrow=16 ncol=24
If this is not correct, specify the pdim argument and re-run.
Warning in write.table(GL, file = sprintf("Tab3_%s.txt", c), append = TRUE,  :
  appending column names to file
Warning in write.table(GL, file = sprintf("Tab3_%s.txt", c), append = TRUE,  :
  appending column names to file
Warning in write.table(GL, file = sprintf("Tab3_%s.txt", c), append = TRUE,  :
  appending column names to file

Error: processing vignette 'RNAinteractMAPK.Rnw' failed with diagnostics:
 chunk 136 (label = Tab. 3: Interaction lists) 
Error in sprintf("%0.3f", GL.text[[i]]) : 
  invalid format '%0.3f'; use format %s for character objects

--- failed re-building ‘RNAinteractMAPK.Rnw’

SUMMARY: processing the following file failed:
  ‘RNAinteractMAPK.Rnw’

Error: Vignette re-building failed.
Execution halted