Zheng Wei
| Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020) |
| URL: https://git.bioconductor.org/packages/pipeFrame |
| Branch: RELEASE_3_11 |
| Last Commit: bc555d6 |
| Last Changed Date: 2020-04-27 15:26:25 -0400 (Mon, 27 Apr 2020) |
| Back to Multiple platform build/check report for BioC 3.11 |
|
This page was generated on 2020-10-17 11:55:23 -0400 (Sat, 17 Oct 2020).
| TO THE DEVELOPERS/MAINTAINERS OF THE pipeFrame PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1317/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| pipeFrame 1.4.0 Zheng Wei
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | [ OK ] | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |
| Package: pipeFrame |
| Version: 1.4.0 |
| Command: /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD check --install=check:pipeFrame.install-out.txt --library=/home/biocbuild/bbs-3.11-bioc/R/library --no-vignettes --timings pipeFrame_1.4.0.tar.gz |
| StartedAt: 2020-10-17 04:08:22 -0400 (Sat, 17 Oct 2020) |
| EndedAt: 2020-10-17 04:12:27 -0400 (Sat, 17 Oct 2020) |
| EllapsedTime: 245.9 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: pipeFrame.Rcheck |
| Warnings: 0 |
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### Running command:
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### /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD check --install=check:pipeFrame.install-out.txt --library=/home/biocbuild/bbs-3.11-bioc/R/library --no-vignettes --timings pipeFrame_1.4.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.11-bioc/meat/pipeFrame.Rcheck’
* using R version 4.0.3 (2020-10-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘pipeFrame/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘pipeFrame’ version ‘1.4.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘pipeFrame’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
Step-class 5.661 0.207 5.879
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘testthat.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
pipeFrame.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD INSTALL pipeFrame ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.11-bioc/R/library’ * installing *source* package ‘pipeFrame’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (pipeFrame)
pipeFrame.Rcheck/tests/testthat.Rout
R version 4.0.3 (2020-10-10) -- "Bunny-Wunnies Freak Out"
Copyright (C) 2020 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(pipeFrame)
>
> test_check("pipeFrame")
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[1] "/home/biocbuild/bbs-3.11-bioc/meat/pipeFrame.Rcheck/tests/testthat/testJobName/Step_01_pipe_OverlappedRandomRegion/test.bed"
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[1] "/home/biocbuild/bbs-3.11-bioc/meat/pipeFrame.Rcheck/tests/testthat/testJobName/Step_01_pipe_OverlappedRandomRegion/test.bed"
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══ testthat results ═══════════════════════════════════════════════════════════
[ OK: 29 | SKIPPED: 0 | WARNINGS: 47 | FAILED: 0 ]
>
> proc.time()
user system elapsed
18.384 0.879 19.253
pipeFrame.Rcheck/pipeFrame-Ex.timings
| name | user | system | elapsed | |
| Step-class | 5.661 | 0.207 | 5.879 | |
| Utils | 0.002 | 0.001 | 0.003 | |
| getObjsInPipe | 0.014 | 0.000 | 0.013 | |
| graphMng | 0.092 | 0.000 | 0.092 | |
| ignoreCheck | 0 | 0 | 0 | |
| initPipeFrame | 0.000 | 0.001 | 0.001 | |
| loadConfig | 0.000 | 0.001 | 0.002 | |
| loadStep | 0.001 | 0.000 | 0.011 | |
| runWithFinishCheck | 0 | 0 | 0 | |
| setGenome | 0 | 0 | 0 | |
| setJobName | 0 | 0 | 0 | |
| setPipeName | 0 | 0 | 0 | |
| setRefDir | 0.000 | 0.001 | 0.001 | |
| setThreads | 0.003 | 0.052 | 0.070 | |
| setTmpDir | 0 | 0 | 0 | |