Back to Multiple platform build/check report for BioC 3.11 |
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This page was generated on 2020-10-17 11:54:55 -0400 (Sat, 17 Oct 2020).
TO THE DEVELOPERS/MAINTAINERS OF THE heatmaps PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 807/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
heatmaps 1.12.0 Malcolm Perry
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | [ OK ] | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK |
Package: heatmaps |
Version: 1.12.0 |
Command: /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD check --install=check:heatmaps.install-out.txt --library=/home/biocbuild/bbs-3.11-bioc/R/library --no-vignettes --timings heatmaps_1.12.0.tar.gz |
StartedAt: 2020-10-17 02:08:55 -0400 (Sat, 17 Oct 2020) |
EndedAt: 2020-10-17 02:11:15 -0400 (Sat, 17 Oct 2020) |
EllapsedTime: 139.9 seconds |
RetCode: 0 |
Status: OK |
CheckDir: heatmaps.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD check --install=check:heatmaps.install-out.txt --library=/home/biocbuild/bbs-3.11-bioc/R/library --no-vignettes --timings heatmaps_1.12.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.11-bioc/meat/heatmaps.Rcheck’ * using R version 4.0.3 (2020-10-10) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘heatmaps/DESCRIPTION’ ... OK * this is package ‘heatmaps’ version ‘1.12.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘heatmaps’ can be installed ... OK * checking installed package size ... NOTE installed size is 7.5Mb sub-directories of 1Mb or more: extdata 6.9Mb * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE makeGaussian2D: no visible binding for global variable ‘dnorm’ Undefined global functions or variables: dnorm Consider adding importFrom("stats", "dnorm") to your NAMESPACE file. * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘testthat.R’ OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 2 NOTEs See ‘/home/biocbuild/bbs-3.11-bioc/meat/heatmaps.Rcheck/00check.log’ for details.
heatmaps.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD INSTALL heatmaps ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.11-bioc/R/library’ * installing *source* package ‘heatmaps’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading Creating a new generic function for ‘scale’ in package ‘heatmaps’ ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (heatmaps)
heatmaps.Rcheck/tests/testthat.Rout
R version 4.0.3 (2020-10-10) -- "Bunny-Wunnies Freak Out" Copyright (C) 2020 The R Foundation for Statistical Computing Platform: x86_64-pc-linux-gnu (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > library(testthat) > library(heatmaps) Attaching package: 'heatmaps' The following object is masked from 'package:base': scale > > test_check("heatmaps") ══ testthat results ═══════════════════════════════════════════════════════════ [ OK: 22 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 0 ] > > proc.time() user system elapsed 8.449 0.302 8.736
heatmaps.Rcheck/heatmaps-Ex.timings
name | user | system | elapsed | |
CoverageHeatmap | 0.696 | 0.004 | 0.700 | |
Heatmap-class | 0.013 | 0.000 | 0.013 | |
Heatmap | 0.013 | 0.000 | 0.014 | |
PWMScanHeatmap | 0.057 | 0.004 | 0.060 | |
PatternHeatmap | 0.083 | 0.000 | 0.084 | |
coords | 0.013 | 0.000 | 0.012 | |
default_color | 0.008 | 0.000 | 0.009 | |
getScale | 0 | 0 | 0 | |
heatmapOptions | 0.001 | 0.000 | 0.000 | |
image | 0.012 | 0.003 | 0.015 | |
label | 0.008 | 0.004 | 0.013 | |
metadata | 0.013 | 0.000 | 0.013 | |
nseq | 0.024 | 0.000 | 0.024 | |
plotHeatmap | 0.046 | 0.000 | 0.046 | |
plotHeatmapList | 0.108 | 0.008 | 0.117 | |
plotHeatmapMeta | 0.044 | 0.000 | 0.043 | |
plotPatternDensityMap | 0.895 | 0.000 | 0.895 | |
plot_clusters | 0.075 | 0.004 | 0.079 | |
plot_legend | 0.016 | 0.004 | 0.019 | |
scale | 0.013 | 0.000 | 0.012 | |
smoothHeatmap | 0.050 | 0.000 | 0.102 | |
xm | 0.015 | 0.000 | 0.015 | |
ym | 0.017 | 0.000 | 0.017 | |