Claudio Lottaz
| Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020) |
| URL: https://git.bioconductor.org/packages/adSplit |
| Branch: RELEASE_3_11 |
| Last Commit: 0398559 |
| Last Changed Date: 2020-04-27 14:12:56 -0400 (Mon, 27 Apr 2020) |
| Back to Multiple platform build/check report for BioC 3.11 |
|
This page was generated on 2020-10-17 11:58:01 -0400 (Sat, 17 Oct 2020).
| TO THE DEVELOPERS/MAINTAINERS OF THE adSplit PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 20/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| adSplit 1.58.0 Claudio Lottaz
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | OK | | ||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | WARNINGS | [ OK ] | |
| Package: adSplit |
| Version: 1.58.0 |
| Command: rm -rf adSplit.buildbin-libdir && mkdir adSplit.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh adSplit_1.58.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R adSplit.buildbin-libdir |
| StartedAt: 2020-10-17 06:33:09 -0400 (Sat, 17 Oct 2020) |
| EndedAt: 2020-10-17 06:33:54 -0400 (Sat, 17 Oct 2020) |
| EllapsedTime: 44.9 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: adSplit_1.58.0.tgz |
| PackageFileSize: 342 KiB |
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### Running command:
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### rm -rf adSplit.buildbin-libdir && mkdir adSplit.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh adSplit_1.58.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R adSplit.buildbin-libdir
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>>>>>>>
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=adSplit.buildbin-libdir adSplit_1.58.0.tar.gz'
>>>>>>>
* installing *source* package ‘adSplit’ ...
** using staged installation
** libs
clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c adSplit.cpp -o adSplit.o
adSplit.cpp:256:28: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings]
throw Tomato(__LINE__, "tscore: internal error, shame on the programmer");
^
adSplit.cpp:469:30: warning: ISO C++11 does not allow conversion from string literal to 'char *' [-Wwritable-strings]
throw Tomato(__LINE__, "isis() called with unknown function");
^
2 warnings generated.
clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o adSplit.so adSplit.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.11-bioc/meat/adSplit.buildbin-libdir/00LOCK-adSplit/00new/adSplit/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (adSplit)
>>>>>>>
>>>>>>> FIXING LINKS FOR adSplit.buildbin-libdir/adSplit/libs/adSplit.so
>>>>>>>
install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libgcc_s.1.dylib" "adSplit.buildbin-libdir/adSplit/libs/adSplit.so"
install_name_tool -change "/usr/local/lib/libgfortran.5.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libgfortran.5.dylib" "adSplit.buildbin-libdir/adSplit/libs/adSplit.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libquadmath.0.dylib" "adSplit.buildbin-libdir/adSplit/libs/adSplit.so"