Patrick Kimes
| Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020) |
| URL: https://git.bioconductor.org/packages/SummarizedBenchmark |
| Branch: RELEASE_3_11 |
| Last Commit: 7d6f875 |
| Last Changed Date: 2020-04-27 15:14:45 -0400 (Mon, 27 Apr 2020) |
| Back to Multiple platform build/check report for BioC 3.11 |
|
This page was generated on 2020-10-17 11:57:54 -0400 (Sat, 17 Oct 2020).
| TO THE DEVELOPERS/MAINTAINERS OF THE SummarizedBenchmark PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1757/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| SummarizedBenchmark 2.6.0 Patrick Kimes
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | WARNINGS | NA | |||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |
| Package: SummarizedBenchmark |
| Version: 2.6.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/SummarizedBenchmark_2.6.0.tar.gz && rm -rf SummarizedBenchmark.buildbin-libdir && mkdir SummarizedBenchmark.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=SummarizedBenchmark.buildbin-libdir SummarizedBenchmark_2.6.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL SummarizedBenchmark_2.6.0.zip && rm SummarizedBenchmark_2.6.0.tar.gz SummarizedBenchmark_2.6.0.zip |
| StartedAt: 2020-10-16 18:20:54 -0400 (Fri, 16 Oct 2020) |
| EndedAt: 2020-10-16 18:22:06 -0400 (Fri, 16 Oct 2020) |
| EllapsedTime: 72.5 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/SummarizedBenchmark_2.6.0.tar.gz && rm -rf SummarizedBenchmark.buildbin-libdir && mkdir SummarizedBenchmark.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=SummarizedBenchmark.buildbin-libdir SummarizedBenchmark_2.6.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL SummarizedBenchmark_2.6.0.zip && rm SummarizedBenchmark_2.6.0.tar.gz SummarizedBenchmark_2.6.0.zip
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install for i386
* installing *source* package 'SummarizedBenchmark' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'SummarizedBenchmark'
finding HTML links ... done
BDData-class html
BDData-setter html
BDData-show html
BDData html
BDMethod-class html
BDMethod-setter html
BDMethod-show html
BDMethod html
BDMethodList-class html
BDMethodList-setter html
BDMethodList-show html
BDMethodList html
BenchDesign-class html
BenchDesign-show html
BenchDesign html
SummarizedBenchmark-class html
finding level-2 HTML links ... done
SummarizedBenchmark html
addMethod html
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpCy8yng/R.INSTALL14ec22c65d95/SummarizedBenchmark/man/addMethod.Rd:47: file link 'quotation' in package 'rlang' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpCy8yng/R.INSTALL14ec22c65d95/SummarizedBenchmark/man/addMethod.Rd:17: file link 'quotation' in package 'rlang' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpCy8yng/R.INSTALL14ec22c65d95/SummarizedBenchmark/man/addMethod.Rd:76: file link 'quotation' in package 'rlang' does not exist and so has been treated as a topic
addPerformanceMetric html
allSB html
assayNames-setter html
availableMetrics html
buildBench html
compareBDData html
compareBDMethod html
compareBenchDesigns html
dropMethod html
estimateMetrics html
expandMethod html
groundTruths-setter html
groundTruths html
hashBDData html
mcols-setter html
modifyMethod html
Rd warning: C:/Users/biocbuild/bbs-3.11-bioc/tmpdir/RtmpCy8yng/R.INSTALL14ec22c65d95/SummarizedBenchmark/man/modifyMethod.Rd:14: file link 'quotation' in package 'rlang' does not exist and so has been treated as a topic
modmethod html
performanceMetrics-setter html
performanceMetrics html
plotMethodsOverlap html
plotROC html
printMethod html
sb html
tdat html
tidyBDMethod html
tidyUpMetrics html
updateBench html
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'SummarizedBenchmark' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'SummarizedBenchmark' as SummarizedBenchmark_2.6.0.zip
* DONE (SummarizedBenchmark)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'SummarizedBenchmark' successfully unpacked and MD5 sums checked