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This page was generated on 2020-10-17 11:59:03 -0400 (Sat, 17 Oct 2020).
TO THE DEVELOPERS/MAINTAINERS OF THE NanoStringQCPro PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 1171/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
NanoStringQCPro 1.20.0 Robert Ziman
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | [ OK ] | OK |
Package: NanoStringQCPro |
Version: 1.20.0 |
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:NanoStringQCPro.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings NanoStringQCPro_1.20.0.tar.gz |
StartedAt: 2020-10-17 03:25:46 -0400 (Sat, 17 Oct 2020) |
EndedAt: 2020-10-17 03:28:43 -0400 (Sat, 17 Oct 2020) |
EllapsedTime: 177.0 seconds |
RetCode: 0 |
Status: OK |
CheckDir: NanoStringQCPro.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:NanoStringQCPro.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings NanoStringQCPro_1.20.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.11-bioc/meat/NanoStringQCPro.Rcheck’ * using R version 4.0.3 (2020-10-10) * using platform: x86_64-apple-darwin17.0 (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘NanoStringQCPro/DESCRIPTION’ ... OK * this is package ‘NanoStringQCPro’ version ‘1.20.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘NanoStringQCPro’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... NOTE Package listed in more than one of Depends, Imports, Suggests, Enhances: ‘knitr’ A package should be listed in only one of these fields. * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE centeredSampleClustering: no visible global function definition for ‘png’ centeredSampleClustering: no visible global function definition for ‘dev.off’ countsInBlankSamples_verticalPlot: no visible global function definition for ‘png’ countsInBlankSamples_verticalPlot: no visible global function definition for ‘dev.off’ geneClustering: no visible global function definition for ‘png’ geneClustering: no visible global function definition for ‘dev.off’ negCtrlsByLane_verticalPlot: no visible global function definition for ‘png’ negCtrlsByLane_verticalPlot: no visible global function definition for ‘dev.off’ previewPNG: no visible global function definition for ‘png’ previewPNG: no visible global function definition for ‘dev.off’ sampleClustering,RccSet: no visible global function definition for ‘png’ sampleClustering,RccSet: no visible global function definition for ‘dev.off’ Undefined global functions or variables: dev.off png Consider adding importFrom("grDevices", "dev.off", "png") to your NAMESPACE file. * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking sizes of PDF files under ‘inst/doc’ ... OK * checking installed files from ‘inst/doc’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed makeQCReport 16.333 0.563 18.376 * checking PDF version of manual ... OK * DONE Status: 2 NOTEs See ‘/Users/biocbuild/bbs-3.11-bioc/meat/NanoStringQCPro.Rcheck/00check.log’ for details.
NanoStringQCPro.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL NanoStringQCPro ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.0/Resources/library’ * installing *source* package ‘NanoStringQCPro’ ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (NanoStringQCPro)
NanoStringQCPro.Rcheck/NanoStringQCPro-Ex.timings
name | user | system | elapsed | |
RccSet-class | 0.710 | 0.010 | 0.721 | |
addCodesetAnnotation | 0.334 | 0.008 | 0.346 | |
buildCodesetAnnotation | 0.013 | 0.001 | 0.014 | |
checkRccSet | 0.091 | 0.002 | 0.094 | |
contentNorm | 0.184 | 0.002 | 0.186 | |
copyRccSet | 0.022 | 0.002 | 0.025 | |
getBackground | 0.148 | 0.002 | 0.150 | |
getBlankLabel | 0.002 | 0.002 | 0.004 | |
makeQCReport | 16.333 | 0.563 | 18.376 | |
newRccSet | 0.353 | 0.016 | 0.371 | |
posCtrlNorm | 0.030 | 0.004 | 0.035 | |
preprocRccSet | 0.216 | 0.003 | 0.219 | |
presAbsCall | 0.067 | 0.002 | 0.069 | |
readCdrDesignData | 0.003 | 0.001 | 0.003 | |
readRcc | 0.006 | 0.001 | 0.006 | |
readRlf | 0.005 | 0.000 | 0.006 | |
subtractBackground | 0.098 | 0.002 | 0.100 | |