David S Fischer
| Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020) |
| URL: https://git.bioconductor.org/packages/LineagePulse |
| Branch: RELEASE_3_11 |
| Last Commit: 13f0ec8 |
| Last Changed Date: 2020-04-27 15:12:36 -0400 (Mon, 27 Apr 2020) |
| Back to Multiple platform build/check report for BioC 3.11 |
|
This page was generated on 2020-10-17 11:56:57 -0400 (Sat, 17 Oct 2020).
| TO THE DEVELOPERS/MAINTAINERS OF THE LineagePulse PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 939/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| LineagePulse 1.8.0 David S Fischer
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | WARNINGS | OK | | ||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | WARNINGS | OK | |
| Package: LineagePulse |
| Version: 1.8.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/LineagePulse_1.8.0.tar.gz && rm -rf LineagePulse.buildbin-libdir && mkdir LineagePulse.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=LineagePulse.buildbin-libdir LineagePulse_1.8.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL LineagePulse_1.8.0.zip && rm LineagePulse_1.8.0.tar.gz LineagePulse_1.8.0.zip |
| StartedAt: 2020-10-16 18:31:49 -0400 (Fri, 16 Oct 2020) |
| EndedAt: 2020-10-16 18:32:45 -0400 (Fri, 16 Oct 2020) |
| EllapsedTime: 56.3 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/LineagePulse_1.8.0.tar.gz && rm -rf LineagePulse.buildbin-libdir && mkdir LineagePulse.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=LineagePulse.buildbin-libdir LineagePulse_1.8.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL LineagePulse_1.8.0.zip && rm LineagePulse_1.8.0.tar.gz LineagePulse_1.8.0.zip
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install for i386
* installing *source* package 'LineagePulse' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
Note: possible error in 'evalLogLikGeneMM(vecCounts = vecCounts, ': unused arguments (matDispParam = matDispParam, matDropParam = matDropParam, matWeights = matWeights)
Note: possible error in 'evalLogLikGeneMM(vecCounts = vecCounts, ': unused arguments (matDispParam = do.call(cbind, lapply(seq_len(ncol(matWeights)), function(m) vecDispParam)), matDropParam = do.call(cbind, lapply(seq_len(ncol(matWeights)), function(m) vecPiParam)), matWeights = matWeights)
** help
*** installing help indices
converting help for package 'LineagePulse'
finding HTML links ... done
LPsetters html
LineagePulseObject-class html
accessors html
calcNormConst html
calcPostDrop_Matrix html
calcPostDrop_Vector html
cash-LineagePulseObject-method html
decompressDispByGene html
decompressDispByGeneMM html
decompressDropoutRateByCell html
decompressDropoutRateByGene html
decompressMeansByGene html
decompressMuByGeneMM html
evalDropoutModel html
evalDropoutModel_comp html
evalImpulseModel html
evalImpulseModel_comp html
evalLogLikGene html
evalLogLikGeneMM html
evalLogLikMatrix html
evalLogLikMuDispGeneFit html
evalLogLikMuDispGeneFit_comp html
evalLogLikNB html
evalLogLikNB_comp html
evalLogLikPiZINB_ManyCells html
evalLogLikPiZINB_ManyCells_comp html
evalLogLikPiZINB_SingleCell html
evalLogLikPiZINB_SingleCell_comp html
evalLogLikZINB html
evalLogLikZINB_comp html
fitLPModels html
fitModel html
fitMuDisp html
fitMuDispGene html
fitMuDispGeneImpulse html
fitMuDispGeneMM html
fitPi html
fitPi_ManyCells html
fitPi_SingleCell html
getFitsDispersion html
getFitsDropout html
getFitsMean html
getNormData html
getPostDrop html
initDispModel html
initDropModel html
initMuModel html
initialiseImpulseParameters html
names-LineagePulseObject-method html
plotCellDensity html
plotGene html
processSCData html
runDEAnalysis html
runLineagePulse html
simulateContinuousDataSet html
sortGeneTrajectories html
sub-sub-LineagePulseObject-character-missing-method
html
testDropout html
writeReport html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'LineagePulse' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'LineagePulse' as LineagePulse_1.8.0.zip
* DONE (LineagePulse)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'LineagePulse' successfully unpacked and MD5 sums checked