Back to Multiple platform build/check report for BioC 3.11 |
|
This page was generated on 2020-10-17 11:56:19 -0400 (Sat, 17 Oct 2020).
TO THE DEVELOPERS/MAINTAINERS OF THE CNAnorm PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 328/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
CNAnorm 1.34.0 Stefano Berri
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | OK | OK | |||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK |
Package: CNAnorm |
Version: 1.34.0 |
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/CNAnorm_1.34.0.tar.gz && rm -rf CNAnorm.buildbin-libdir && mkdir CNAnorm.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=CNAnorm.buildbin-libdir CNAnorm_1.34.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL CNAnorm_1.34.0.zip && rm CNAnorm_1.34.0.tar.gz CNAnorm_1.34.0.zip |
StartedAt: 2020-10-16 16:50:49 -0400 (Fri, 16 Oct 2020) |
EndedAt: 2020-10-16 16:51:25 -0400 (Fri, 16 Oct 2020) |
EllapsedTime: 36.0 seconds |
RetCode: 0 |
Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/CNAnorm_1.34.0.tar.gz && rm -rf CNAnorm.buildbin-libdir && mkdir CNAnorm.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=CNAnorm.buildbin-libdir CNAnorm_1.34.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL CNAnorm_1.34.0.zip && rm CNAnorm_1.34.0.tar.gz CNAnorm_1.34.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 288k 100 288k 0 0 4868k 0 --:--:-- --:--:-- --:--:-- 5544k install for i386 * installing *source* package 'CNAnorm' ... ** using staged installation ** libs "C:/rtools40/mingw32/bin/"gfortran -fno-optimize-sibling-calls -O2 -mfpmath=sse -msse2 -mstackrealign -c daxpy.f -o daxpy.o "C:/rtools40/mingw32/bin/"gfortran -fno-optimize-sibling-calls -O2 -mfpmath=sse -msse2 -mstackrealign -c ddot.f -o ddot.o "C:/rtools40/mingw32/bin/"gfortran -fno-optimize-sibling-calls -O2 -mfpmath=sse -msse2 -mstackrealign -c dgbfa.f -o dgbfa.o "C:/rtools40/mingw32/bin/"gfortran -fno-optimize-sibling-calls -O2 -mfpmath=sse -msse2 -mstackrealign -c dgbsl.f -o dgbsl.o "C:/rtools40/mingw32/bin/"gfortran -fno-optimize-sibling-calls -O2 -mfpmath=sse -msse2 -mstackrealign -c dscal.f -o dscal.o "C:/rtools40/mingw32/bin/"gfortran -fno-optimize-sibling-calls -O2 -mfpmath=sse -msse2 -mstackrealign -c dsmooth.f -o dsmooth.o "C:/rtools40/mingw32/bin/"gfortran -fno-optimize-sibling-calls -O2 -mfpmath=sse -msse2 -mstackrealign -c idamax.f -o idamax.o C:/rtools40/mingw32/bin/gcc -shared -s -static-libgcc -o CNAnorm.dll tmp.def daxpy.o ddot.o dgbfa.o dgbsl.o dscal.o dsmooth.o idamax.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -lgfortran -lm -lquadmath -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/i386 -lR installing to C:/Users/biocbuild/bbs-3.11-bioc/meat/CNAnorm.buildbin-libdir/00LOCK-CNAnorm/00new/CNAnorm/libs/i386 ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'CNAnorm' finding HTML links ... done CN html CNAnorm-class html DerivData-class html InData-class html LS041 html Params-class html addDNACopy-methods html addSmooth-methods html chrsAndpos-methods html data-hg19_hs_ideogr html dataFrame2object html discreteNorm-methods html exportTable-method html gPar html gcNorm-methods html peakPloidy html plotGenome-methods html plotPeaks-methods html ratio-methods html suggValid-methods html validation-methods html workflowWrapper html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'CNAnorm' ... ** libs "C:/rtools40/mingw64/bin/"gfortran -fno-optimize-sibling-calls -O2 -mfpmath=sse -msse2 -mstackrealign -c daxpy.f -o daxpy.o "C:/rtools40/mingw64/bin/"gfortran -fno-optimize-sibling-calls -O2 -mfpmath=sse -msse2 -mstackrealign -c ddot.f -o ddot.o "C:/rtools40/mingw64/bin/"gfortran -fno-optimize-sibling-calls -O2 -mfpmath=sse -msse2 -mstackrealign -c dgbfa.f -o dgbfa.o "C:/rtools40/mingw64/bin/"gfortran -fno-optimize-sibling-calls -O2 -mfpmath=sse -msse2 -mstackrealign -c dgbsl.f -o dgbsl.o "C:/rtools40/mingw64/bin/"gfortran -fno-optimize-sibling-calls -O2 -mfpmath=sse -msse2 -mstackrealign -c dscal.f -o dscal.o "C:/rtools40/mingw64/bin/"gfortran -fno-optimize-sibling-calls -O2 -mfpmath=sse -msse2 -mstackrealign -c dsmooth.f -o dsmooth.o "C:/rtools40/mingw64/bin/"gfortran -fno-optimize-sibling-calls -O2 -mfpmath=sse -msse2 -mstackrealign -c idamax.f -o idamax.o C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o CNAnorm.dll tmp.def daxpy.o ddot.o dgbfa.o dgbsl.o dscal.o dsmooth.o idamax.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -lgfortran -lm -lquadmath -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/x64 -lR installing to C:/Users/biocbuild/bbs-3.11-bioc/meat/CNAnorm.buildbin-libdir/CNAnorm/libs/x64 ** testing if installed package can be loaded * MD5 sums packaged installation of 'CNAnorm' as CNAnorm_1.34.0.zip * DONE (CNAnorm) * installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library' package 'CNAnorm' successfully unpacked and MD5 sums checked