##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD check --install=check:AnalysisPageServer.install-out.txt --library=/home/biocbuild/bbs-3.11-bioc/R/library --no-vignettes --timings AnalysisPageServer_1.22.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.11-bioc/meat/AnalysisPageServer.Rcheck’
* using R version 4.0.3 (2020-10-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘AnalysisPageServer/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘AnalysisPageServer’ version ‘1.22.0’
* checking package namespace information ... OK
* checking package dependencies ... NOTE
Packages which this enhances but not available for checking:
  'fork', 'FastRWeb'
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... NOTE
Found the following non-portable file paths:
  AnalysisPageServer/inst/doc/static-example/jspm_packages/github/RubaXa/Sortable@1.4.2/st/og-image.png
  AnalysisPageServer/inst/doc/static-example/jspm_packages/github/marionettejs/backbone.marionette@2.4.4/marionette-logo.png
  AnalysisPageServer/inst/doc/static-example/jspm_packages/github/select2/select2@3.5.4/select2-spinner.gif
  AnalysisPageServer/inst/doc/static-example/jspm_packages/github/t0m/select2-bootstrap-css@1.4.6/_jekyll/fonts/glyphicons-halflings-regular.eot
  AnalysisPageServer/inst/doc/static-example/jspm_packages/github/t0m/select2-bootstrap-css@1.4.6/_jekyll/fonts/glyphicons-halflings-regular.svg
  AnalysisPageServer/inst/doc/static-example/jspm_packages/github/t0m/select2-bootstrap-css@1.4.6/_jekyll/fonts/glyphicons-halflings-regular.ttf
  AnalysisPageServer/inst/doc/static-example/jspm_packages/github/t0m/select2-bootstrap-css@1.4.6/_jekyll/fonts/glyphicons-halflings-regular.woff
  AnalysisPageServer/inst/doc/static-example/jspm_packages/github/t0m/select2-bootstrap-css@1.4.6/_jekyll/fonts/glyphicons-halflings-regular.woff2
  AnalysisPageServer/inst/doc/static-example/jspm_packages/github/twbs/bootstrap@2.3.2/img/glyphicons-halflings-white.png
  AnalysisPageServer/inst/doc/static-example/jspm_packages/github/twbs/bootstrap@2.3.2/img/glyphicons-halflings.png
  AnalysisPageServer/inst/doc/static-example/jspm_packages/npm/font-awesome@4.7.0/fonts/fontawesome-webfont.eot
  AnalysisPageServer/inst/doc/static-example/jspm_packages/npm/font-awesome@4.7.0/fonts/fontawesome-webfont.svg
  AnalysisPageServer/inst/doc/static-example/jspm_packages/npm/font-awesome@4.7.0/fonts/fontawesome-webfont.ttf
  AnalysisPageServer/inst/doc/static-example/jspm_packages/npm/font-awesome@4.7.0/fonts/fontawesome-webfont.woff
  AnalysisPageServer/inst/doc/static-example/jspm_packages/npm/font-awesome@4.7.0/fonts/fontawesome-webfont.woff2
  AnalysisPageServer/inst/doc/static-example2/jspm_packages/github/RubaXa/Sortable@1.4.2/st/og-image.png
  AnalysisPageServer/inst/doc/static-example2/jspm_packages/github/marionettejs/backbone.marionette@2.4.4/marionette-logo.png
  AnalysisPageServer/inst/doc/static-example2/jspm_packages/github/select2/select2@3.5.4/select2-spinner.gif
  AnalysisPageServer/inst/doc/static-example2/jspm_packages/github/t0m/select2-bootstrap-css@1.4.6/_jekyll/fonts/glyphicons-halflings-regular.eot
  AnalysisPageServer/inst/doc/static-example2/jspm_packages/github/t0m/select2-bootstrap-css@1.4.6/_jekyll/fonts/glyphicons-halflings-regular.svg
  AnalysisPageServer/inst/doc/static-example2/jspm_packages/github/t0m/select2-bootstrap-css@1.4.6/_jekyll/fonts/glyphicons-halflings-regular.ttf
  AnalysisPageServer/inst/doc/static-example2/jspm_packages/github/t0m/select2-bootstrap-css@1.4.6/_jekyll/fonts/glyphicons-halflings-regular.woff
  AnalysisPageServer/inst/doc/static-example2/jspm_packages/github/t0m/select2-bootstrap-css@1.4.6/_jekyll/fonts/glyphicons-halflings-regular.woff2
  AnalysisPageServer/inst/doc/static-example2/jspm_packages/github/twbs/bootstrap@2.3.2/img/glyphicons-halflings-white.png
  AnalysisPageServer/inst/doc/static-example2/jspm_packages/github/twbs/bootstrap@2.3.2/img/glyphicons-halflings.png
  AnalysisPageServer/inst/doc/static-example2/jspm_packages/npm/font-awesome@4.7.0/fonts/fontawesome-webfont.eot
  AnalysisPageServer/inst/doc/static-example2/jspm_packages/npm/font-awesome@4.7.0/fonts/fontawesome-webfont.svg
  AnalysisPageServer/inst/doc/static-example2/jspm_packages/npm/font-awesome@4.7.0/fonts/fontawesome-webfont.ttf
  AnalysisPageServer/inst/doc/static-example2/jspm_packages/npm/font-awesome@4.7.0/fonts/fontawesome-webfont.woff
  AnalysisPageServer/inst/doc/static-example2/jspm_packages/npm/font-awesome@4.7.0/fonts/fontawesome-webfont.woff2
  AnalysisPageServer/inst/doc/static-example3/jspm_packages/github/RubaXa/Sortable@1.4.2/st/og-image.png
  AnalysisPageServer/inst/doc/static-example3/jspm_packages/github/marionettejs/backbone.marionette@2.4.4/marionette-logo.png
  AnalysisPageServer/inst/doc/static-example3/jspm_packages/github/select2/select2@3.5.4/select2-spinner.gif
  AnalysisPageServer/inst/doc/static-example3/jspm_packages/github/t0m/select2-bootstrap-css@1.4.6/_jekyll/fonts/glyphicons-halflings-regular.eot
  AnalysisPageServer/inst/doc/static-example3/jspm_packages/github/t0m/select2-bootstrap-css@1.4.6/_jekyll/fonts/glyphicons-halflings-regular.svg
  AnalysisPageServer/inst/doc/static-example3/jspm_packages/github/t0m/select2-bootstrap-css@1.4.6/_jekyll/fonts/glyphicons-halflings-regular.ttf
  AnalysisPageServer/inst/doc/static-example3/jspm_packages/github/t0m/select2-bootstrap-css@1.4.6/_jekyll/fonts/glyphicons-halflings-regular.woff
  AnalysisPageServer/inst/doc/static-example3/jspm_packages/github/t0m/select2-bootstrap-css@1.4.6/_jekyll/fonts/glyphicons-halflings-regular.woff2
  AnalysisPageServer/inst/doc/static-example3/jspm_packages/github/twbs/bootstrap@2.3.2/img/glyphicons-halflings-white.png
  AnalysisPageServer/inst/doc/static-example3/jspm_packages/github/twbs/bootstrap@2.3.2/img/glyphicons-halflings.png
  AnalysisPageServer/inst/doc/static-example3/jspm_packages/npm/font-awesome@4.7.0/fonts/fontawesome-webfont.eot
  AnalysisPageServer/inst/doc/static-example3/jspm_packages/npm/font-awesome@4.7.0/fonts/fontawesome-webfont.svg
  AnalysisPageServer/inst/doc/static-example3/jspm_packages/npm/font-awesome@4.7.0/fonts/fontawesome-webfont.ttf
  AnalysisPageServer/inst/doc/static-example3/jspm_packages/npm/font-awesome@4.7.0/fonts/fontawesome-webfont.woff
  AnalysisPageServer/inst/doc/static-example3/jspm_packages/npm/font-awesome@4.7.0/fonts/fontawesome-webfont.woff2
  AnalysisPageServer/inst/doc/static-example4/jspm_packages/github/RubaXa/Sortable@1.4.2/st/og-image.png
  AnalysisPageServer/inst/doc/static-example4/jspm_packages/github/marionettejs/backbone.marionette@2.4.4/marionette-logo.png
  AnalysisPageServer/inst/doc/static-example4/jspm_packages/github/select2/select2@3.5.4/select2-spinner.gif
  AnalysisPageServer/inst/doc/static-example4/jspm_packages/github/t0m/select2-bootstrap-css@1.4.6/_jekyll/fonts/glyphicons-halflings-regular.eot
  AnalysisPageServer/inst/doc/static-example4/jspm_packages/github/t0m/select2-bootstrap-css@1.4.6/_jekyll/fonts/glyphicons-halflings-regular.svg
  AnalysisPageServer/inst/doc/static-example4/jspm_packages/github/t0m/select2-bootstrap-css@1.4.6/_jekyll/fonts/glyphicons-halflings-regular.ttf
  AnalysisPageServer/inst/doc/static-example4/jspm_packages/github/t0m/select2-bootstrap-css@1.4.6/_jekyll/fonts/glyphicons-halflings-regular.woff
  AnalysisPageServer/inst/doc/static-example4/jspm_packages/github/t0m/select2-bootstrap-css@1.4.6/_jekyll/fonts/glyphicons-halflings-regular.woff2
  AnalysisPageServer/inst/doc/static-example4/jspm_packages/github/twbs/bootstrap@2.3.2/img/glyphicons-halflings-white.png
  AnalysisPageServer/inst/doc/static-example4/jspm_packages/github/twbs/bootstrap@2.3.2/img/glyphicons-halflings.png
  AnalysisPageServer/inst/doc/static-example4/jspm_packages/npm/font-awesome@4.7.0/fonts/fontawesome-webfont.eot
  AnalysisPageServer/inst/doc/static-example4/jspm_packages/npm/font-awesome@4.7.0/fonts/fontawesome-webfont.svg
  AnalysisPageServer/inst/doc/static-example4/jspm_packages/npm/font-awesome@4.7.0/fonts/fontawesome-webfont.ttf
  AnalysisPageServer/inst/doc/static-example4/jspm_packages/npm/font-awesome@4.7.0/fonts/fontawesome-webfont.woff
  AnalysisPageServer/inst/doc/static-example4/jspm_packages/npm/font-awesome@4.7.0/fonts/fontawesome-webfont.woff2
  AnalysisPageServer/inst/htdocs/client/dist-aps/jspm_packages/github/RubaXa/Sortable@1.4.2/st/logo.png
  AnalysisPageServer/inst/htdocs/client/dist-aps/jspm_packages/github/RubaXa/Sortable@1.4.2/st/og-image.png
  AnalysisPageServer/inst/htdocs/client/dist-aps/jspm_packages/github/marionettejs/backbone.marionette@2.4.4/marionette-logo.png
  AnalysisPageServer/inst/htdocs/client/dist-aps/jspm_packages/github/select2/select2@3.5.4/select2-spinner.gif
  AnalysisPageServer/inst/htdocs/client/dist-aps/jspm_packages/github/select2/select2@3.5.4/select2.png
  AnalysisPageServer/inst/htdocs/client/dist-aps/jspm_packages/github/select2/select2@3.5.4/select2x2.png
  AnalysisPageServer/inst/htdocs/client/dist-aps/jspm_packages/github/t0m/select2-bootstrap-css@1.4.6/_jekyll/fonts/glyphicons-halflings-regular.eot
  AnalysisPageServer/inst/htdocs/client/dist-aps/jspm_packages/github/t0m/select2-bootstrap-css@1.4.6/_jekyll/fonts/glyphicons-halflings-regular.svg
  AnalysisPageServer/inst/htdocs/client/dist-aps/jspm_packages/github/t0m/select2-bootstrap-css@1.4.6/_jekyll/fonts/glyphicons-halflings-regular.ttf
  AnalysisPageServer/inst/htdocs/client/dist-aps/jspm_packages/github/t0m/select2-bootstrap-css@1.4.6/_jekyll/fonts/glyphicons-halflings-regular.woff
  AnalysisPageServer/inst/htdocs/client/dist-aps/jspm_packages/github/t0m/select2-bootstrap-css@1.4.6/_jekyll/fonts/glyphicons-halflings-regular.woff2
  AnalysisPageServer/inst/htdocs/client/dist-aps/jspm_packages/github/twbs/bootstrap@2.3.2/img/glyphicons-halflings-white.png
  AnalysisPageServer/inst/htdocs/client/dist-aps/jspm_packages/github/twbs/bootstrap@2.3.2/img/glyphicons-halflings.png
  AnalysisPageServer/inst/htdocs/client/dist-aps/jspm_packages/npm/font-awesome@4.5.0/fonts/fontawesome-webfont.eot
  AnalysisPageServer/inst/htdocs/client/dist-aps/jspm_packages/npm/font-awesome@4.5.0/fonts/fontawesome-webfont.svg
  AnalysisPageServer/inst/htdocs/client/dist-aps/jspm_packages/npm/font-awesome@4.5.0/fonts/fontawesome-webfont.ttf
  AnalysisPageServer/inst/htdocs/client/dist-aps/jspm_packages/npm/font-awesome@4.5.0/fonts/fontawesome-webfont.woff
  AnalysisPageServer/inst/htdocs/client/dist-aps/jspm_packages/npm/font-awesome@4.5.0/fonts/fontawesome-webfont.woff2
  AnalysisPageServer/inst/htdocs/client/dist-apss/jspm_packages/github/RubaXa/Sortable@1.4.2/st/logo.png
  AnalysisPageServer/inst/htdocs/client/dist-apss/jspm_packages/github/RubaXa/Sortable@1.4.2/st/og-image.png
  AnalysisPageServer/inst/htdocs/client/dist-apss/jspm_packages/github/marionettejs/backbone.marionette@2.4.4/marionette-logo.png
  AnalysisPageServer/inst/htdocs/client/dist-apss/jspm_packages/github/select2/select2@3.5.4/select2-spinner.gif
  AnalysisPageServer/inst/htdocs/client/dist-apss/jspm_packages/github/select2/select2@3.5.4/select2.png
  AnalysisPageServer/inst/htdocs/client/dist-apss/jspm_packages/github/select2/select2@3.5.4/select2x2.png
  AnalysisPageServer/inst/htdocs/client/dist-apss/jspm_packages/github/t0m/select2-bootstrap-css@1.4.6/_jekyll/fonts/glyphicons-halflings-regular.eot
  AnalysisPageServer/inst/htdocs/client/dist-apss/jspm_packages/github/t0m/select2-bootstrap-css@1.4.6/_jekyll/fonts/glyphicons-halflings-regular.svg
  AnalysisPageServer/inst/htdocs/client/dist-apss/jspm_packages/github/t0m/select2-bootstrap-css@1.4.6/_jekyll/fonts/glyphicons-halflings-regular.ttf
  AnalysisPageServer/inst/htdocs/client/dist-apss/jspm_packages/github/t0m/select2-bootstrap-css@1.4.6/_jekyll/fonts/glyphicons-halflings-regular.woff
  AnalysisPageServer/inst/htdocs/client/dist-apss/jspm_packages/github/t0m/select2-bootstrap-css@1.4.6/_jekyll/fonts/glyphicons-halflings-regular.woff2
  AnalysisPageServer/inst/htdocs/client/dist-apss/jspm_packages/github/twbs/bootstrap@2.3.2/img/glyphicons-halflings-white.png
  AnalysisPageServer/inst/htdocs/client/dist-apss/jspm_packages/github/twbs/bootstrap@2.3.2/img/glyphicons-halflings.png
  AnalysisPageServer/inst/htdocs/client/dist-apss/jspm_packages/npm/font-awesome@4.7.0/fonts/fontawesome-webfont.eot
  AnalysisPageServer/inst/htdocs/client/dist-apss/jspm_packages/npm/font-awesome@4.7.0/fonts/fontawesome-webfont.svg
  AnalysisPageServer/inst/htdocs/client/dist-apss/jspm_packages/npm/font-awesome@4.7.0/fonts/fontawesome-webfont.ttf
  AnalysisPageServer/inst/htdocs/client/dist-apss/jspm_packages/npm/font-awesome@4.7.0/fonts/fontawesome-webfont.woff
  AnalysisPageServer/inst/htdocs/client/dist-apss/jspm_packages/npm/font-awesome@4.7.0/fonts/fontawesome-webfont.woff2
  AnalysisPageServer/inst/htdocs/client/src/AnalysisPageServer/Forms/show/compositeview/landingTemplate.html
  AnalysisPageServer/inst/htdocs/client/src/AnalysisPageServer/Forms/show/compositeview/primaryTemplate.html
  AnalysisPageServer/inst/htdocs/client/src/AnalysisPageServer/Forms/show/compositeview/secondaryTemplate.html
  AnalysisPageServer/inst/htdocs/client/src/AnalysisPageServer/Pages/Analysis/show/AnalysisPageShowController.js
  AnalysisPageServer/inst/htdocs/client/src/AnalysisPageServer/Pages/Analysis/show/AnalysisPageShowRouter.js
  AnalysisPageServer/inst/htdocs/client/src/AnalysisPageServer/Pages/Landing/ToolOverview/show/ToolOverviewShowController.js
  AnalysisPageServer/inst/htdocs/client/src/AnalysisPageServer/Pages/Landing/ToolOverview/show/itemview/ToolOverviewBodyView.js
  AnalysisPageServer/inst/htdocs/client/src/AnalysisPageServer/Pages/Landing/ToolOverview/show/itemview/ToolOverviewListView.js
  AnalysisPageServer/inst/htdocs/client/src/AnalysisPageServer/Pages/Landing/ToolOverview/show/itemview/bodyTemplate.html
  AnalysisPageServer/inst/htdocs/client/src/AnalysisPageServer/Pages/Landing/ToolOverview/show/itemview/listTemplate.html
  AnalysisPageServer/inst/htdocs/client/src/AnalysisPageServer/Pages/Landing/ToolOverview/show/layoutview/ToolOverviewView.js
  AnalysisPageServer/inst/htdocs/client/src/AnalysisPageServer/Pages/Landing/ToolOverview/show/layoutview/template.html
  AnalysisPageServer/inst/htdocs/client/src/AnalysisPageServer/Pages/Landing/ToolOverview/tooloverview-app.js
  AnalysisPageServer/inst/htdocs/client/src/AnalysisPageServer/Pages/Landing/show/APSLandingPageShowController.js
  AnalysisPageServer/inst/htdocs/client/src/AnalysisPageServer/Pages/Landing/show/EPLandingPageShowController.js
  AnalysisPageServer/inst/htdocs/client/src/AnalysisPageServer/Pages/Landing/show/EPStudyFormShowController.js
  AnalysisPageServer/inst/htdocs/client/src/AnalysisPageServer/Pages/Landing/show/LandingPageShowRouter.js
  AnalysisPageServer/inst/htdocs/client/src/AnalysisPageServer/Pages/Landing/show/layoutview/APSLandingPageView.js
  AnalysisPageServer/inst/htdocs/client/src/AnalysisPageServer/Pages/Landing/show/layoutview/APStemplate.html
  AnalysisPageServer/inst/htdocs/client/src/AnalysisPageServer/Pages/Landing/show/layoutview/EPLandingPageView.js
  AnalysisPageServer/inst/htdocs/client/src/AnalysisPageServer/Pages/Landing/show/layoutview/EPtemplate.html
  AnalysisPageServer/inst/htdocs/client/src/AnalysisPageServer/Pages/Landing/show/layoutview/ep-landing.less
  AnalysisPageServer/inst/htdocs/client/src/AnalysisPageServer/Pages/Primary/show/PrimaryPageShowController.js
  AnalysisPageServer/inst/htdocs/client/src/AnalysisPageServer/Pages/Primary/show/PrimaryPageShowRouter.js
  AnalysisPageServer/inst/htdocs/client/src/AnalysisPageServer/Pages/Primary/show/layoutview/PrimaryPageView.js
  AnalysisPageServer/inst/htdocs/client/src/AnalysisPageServer/Pages/Primary/show/layoutview/template.html
  AnalysisPageServer/inst/htdocs/client/src/AnalysisPageServer/Parameters/Combobox/SuggestionsCallbackController.js
  AnalysisPageServer/inst/htdocs/client/src/AnalysisPageServer/Parameters/Combobox/models/ComboboxParameterModel.js
  AnalysisPageServer/inst/htdocs/client/src/AnalysisPageServer/Parameters/Combobox/models/createComboboxParameterModel.js
  AnalysisPageServer/inst/htdocs/client/src/AnalysisPageServer/Parameters/Combobox/models/multipleMixin.js
  AnalysisPageServer/inst/htdocs/client/src/AnalysisPageServer/Parameters/Combobox/models/nonMultipleMixin.js
  AnalysisPageServer/inst/htdocs/client/src/AnalysisPageServer/Parameters/Combobox/models/nonSelfDependentMixin.js
  AnalysisPageServer/inst/htdocs/client/src/AnalysisPageServer/Parameters/Combobox/models/selfDependentMixin.js
  AnalysisPageServer/inst/htdocs/client/src/AnalysisPageServer/Parameters/Combobox/show/ComboboxShowController.js
  AnalysisPageServer/inst/htdocs/client/src/AnalysisPageServer/Parameters/Combobox/show/Select2ComboboxBehavior.js
  AnalysisPageServer/inst/htdocs/client/src/AnalysisPageServer/Parameters/Combobox/show/itemview/ComboboxParameterView.js
  AnalysisPageServer/inst/htdocs/client/src/AnalysisPageServer/Parameters/Combobox/show/itemview/landingTemplate.html
  AnalysisPageServer/inst/htdocs/client/src/AnalysisPageServer/Parameters/ConditionalPersistent/ConditionalPersistentController.js
  AnalysisPageServer/inst/htdocs/client/src/AnalysisPageServer/Parameters/ConditionalPersistent/models/PersistentParameterCollection.js
  AnalysisPageServer/inst/htdocs/client/src/AnalysisPageServer/Parameters/ConditionalPersistent/models/PersistentParameterModel.js
  AnalysisPageServer/inst/htdocs/client/src/AnalysisPageServer/Parameters/Select/models/SelectParameterModel.js
  AnalysisPageServer/inst/htdocs/client/src/AnalysisPageServer/Parameters/Select/models/createSelectParameterModel.js
  AnalysisPageServer/inst/htdocs/client/src/AnalysisPageServer/Parameters/Select/models/multipleMixin.js
  AnalysisPageServer/inst/htdocs/client/src/AnalysisPageServer/Parameters/Select/models/nonMultipleMixin.js
  AnalysisPageServer/inst/htdocs/client/src/AnalysisPageServer/Parameters/Select/show/Select2SelectBehavior.js
  AnalysisPageServer/inst/htdocs/client/src/AnalysisPageServer/Parameters/Select/show/SelectShowController.js
  AnalysisPageServer/inst/htdocs/client/src/AnalysisPageServer/Parameters/Select/show/itemview/DropdownSelectParameterView.js
  AnalysisPageServer/inst/htdocs/client/src/AnalysisPageServer/Parameters/Select/show/itemview/RadioSelectParameterView.js
  AnalysisPageServer/inst/htdocs/client/src/AnalysisPageServer/Parameters/Select/show/itemview/SelectParameterView.js
  AnalysisPageServer/inst/htdocs/client/src/AnalysisPageServer/Parameters/Select/show/itemview/getSelectParameterView.js
  AnalysisPageServer/inst/htdocs/client/src/AnalysisPageServer/Parameters/Select/show/itemview/radioTemplate.html
  AnalysisPageServer/inst/htdocs/client/src/AnalysisPageServer/Parameters/Select2Behavior/Select2Behavior.js
  AnalysisPageServer/inst/htdocs/client/src/AnalysisPageServer/Parameters/Select2Behavior/ep-select2-no-spinner.css
  AnalysisPageServer/inst/htdocs/client/src/AnalysisPageServer/Parameters/Summary/show/SummaryShowController.js
  AnalysisPageServer/inst/htdocs/client/src/AnalysisPageServer/Parameters/Summary/show/compositeview/ParameterView.js
  AnalysisPageServer/inst/htdocs/client/src/AnalysisPageServer/Parameters/Summary/show/compositeview/ParametersSummaryView.js
  AnalysisPageServer/inst/htdocs/client/src/AnalysisPageServer/Parameters/Summary/show/compositeview/itemTemplate.html
  AnalysisPageServer/inst/htdocs/client/src/AnalysisPageServer/Parameters/Summary/show/compositeview/template.html
  AnalysisPageServer/inst/htdocs/client/src/AnalysisPageServer/Parameters/fetch/ParametersFetchController.js
  AnalysisPageServer/inst/htdocs/client/src/AnalysisPageServer/Parameters/models/ArrayParameterModel.js
  AnalysisPageServer/inst/htdocs/client/src/AnalysisPageServer/Parameters/models/CompoundParameterModel.js
  AnalysisPageServer/inst/htdocs/client/src/AnalysisPageServer/Parameters/models/ParameterChildrenCollection.js
  AnalysisPageServer/inst/htdocs/client/src/AnalysisPageServer/Parameters/models/ParameterCollection.js
  AnalysisPageServer/inst/htdocs/client/src/AnalysisPageServer/Parameters/show/ParametersShowController.js
  AnalysisPageServer/inst/htdocs/client/src/AnalysisPageServer/Parameters/show/behaviors/ParameterBehavior.js
  AnalysisPageServer/inst/htdocs/client/src/AnalysisPageServer/Parameters/show/compositeview/ArrayParameterView.js
  AnalysisPageServer/inst/htdocs/client/src/AnalysisPageServer/Parameters/show/compositeview/CompoundParameterView.js
  AnalysisPageServer/inst/htdocs/client/src/AnalysisPageServer/Parameters/show/compositeview/arrayTemplate.html
  AnalysisPageServer/inst/htdocs/client/src/AnalysisPageServer/Parameters/show/compositeview/compoundTemplate.html
  AnalysisPageServer/inst/htdocs/client/src/AnalysisPageServer/Parameters/show/itemview/BoolParameterView.js
  AnalysisPageServer/inst/htdocs/client/src/AnalysisPageServer/Parameters/show/itemview/FileParameterView.js
  AnalysisPageServer/inst/htdocs/client/src/AnalysisPageServer/Parameters/show/itemview/SliderParameterView.js
  AnalysisPageServer/inst/htdocs/client/src/AnalysisPageServer/Parameters/show/itemview/TextParameterView.js
  AnalysisPageServer/inst/htdocs/client/src/AnalysisPageServer/Parameters/show/itemview/boolTemplate.html
  AnalysisPageServer/inst/htdocs/client/src/AnalysisPageServer/Parameters/show/itemview/fileTemplate.html
  AnalysisPageServer/inst/htdocs/client/src/AnalysisPageServer/Parameters/show/itemview/sliderTemplate.html
  AnalysisPageServer/inst/htdocs/client/src/AnalysisPageServer/Parameters/show/itemview/textTemplate.html
  AnalysisPageServer/inst/htdocs/client/src/AnalysisPageServerStatic/Pages/Datasets/show/DatasetsShowController.js
  AnalysisPageServer/inst/htdocs/client/src/AnalysisPageServerStatic/Pages/Datasets/show/DatasetsShowRouter.js
  AnalysisPageServer/inst/htdocs/client/src/AnalysisPageServerStatic/Pages/Datasets/show/collectionview/DatasetsView.js
  AnalysisPageServer/inst/htdocs/client/src/AnalysisPageServerStatic/Pages/Datasets/show/layoutview/DatasetView.js
  AnalysisPageServer/inst/htdocs/client/src/AnalysisPageServerStatic/Pages/Datasets/show/layoutview/template.html
  AnalysisPageServer/inst/htdocs/client/src/AnalysisPageServerStatic/Pages/fetch/AnalysisFetchController.js
  AnalysisPageServer/inst/htdocs/client/src/AnalysisPageServerStatic/Pages/fetch/PagesFetchController.js
  AnalysisPageServer/inst/htdocs/client/src/Common/AnalysisData/Arrays/show/collectionview/ArrayListView.js
  AnalysisPageServer/inst/htdocs/client/src/Common/AnalysisData/Arrays/show/collectionview/TabsContentView.js
  AnalysisPageServer/inst/htdocs/client/src/Common/AnalysisData/Arrays/show/collectionview/TabsNavView.js
  AnalysisPageServer/inst/htdocs/client/src/Common/AnalysisData/Arrays/show/collectionview/navItemTemplate.html
  AnalysisPageServer/inst/htdocs/client/src/Common/AnalysisData/Arrays/show/layoutview/ArrayListItemView.js
  AnalysisPageServer/inst/htdocs/client/src/Common/AnalysisData/Arrays/show/layoutview/ArrayTabsView.js
  AnalysisPageServer/inst/htdocs/client/src/Common/AnalysisData/Arrays/show/layoutview/itemTemplate.html
  AnalysisPageServer/inst/htdocs/client/src/Common/AnalysisData/Arrays/show/layoutview/tabsTemplate.html
  AnalysisPageServer/inst/htdocs/client/src/Common/AnalysisData/Plots/SideMenu/show/MenuShowController.js
  AnalysisPageServer/inst/htdocs/client/src/Common/AnalysisData/Plots/SideMenu/show/itemview/SideMenuView.js
  AnalysisPageServer/inst/htdocs/client/src/Common/AnalysisData/Plots/SideMenu/show/itemview/template.html
  AnalysisPageServer/inst/htdocs/client/src/Common/AnalysisData/Plots/Sidebar/show/SidebarShowController.js
  AnalysisPageServer/inst/htdocs/client/src/Common/AnalysisData/Plots/Sidebar/show/behaviors/AccordionGroupBehavior.js
  AnalysisPageServer/inst/htdocs/client/src/Common/AnalysisData/Plots/Sidebar/show/compositeview/FilterItemView.js
  AnalysisPageServer/inst/htdocs/client/src/Common/AnalysisData/Plots/Sidebar/show/compositeview/FiltersView.js
  AnalysisPageServer/inst/htdocs/client/src/Common/AnalysisData/Plots/Sidebar/show/compositeview/itemTemplate.html
  AnalysisPageServer/inst/htdocs/client/src/Common/AnalysisData/Plots/Sidebar/show/compositeview/template.html
  AnalysisPageServer/inst/htdocs/client/src/Common/AnalysisData/Plots/Sidebar/show/itemview/CustomSectionView.js
  AnalysisPageServer/inst/htdocs/client/src/Common/AnalysisData/Plots/Sidebar/show/itemview/TaggingView.js
  AnalysisPageServer/inst/htdocs/client/src/Common/AnalysisData/Plots/Sidebar/show/itemview/sectionTemplate.html
  AnalysisPageServer/inst/htdocs/client/src/Common/AnalysisData/Plots/Sidebar/show/itemview/taggingTemplate.html
  AnalysisPageServer/inst/htdocs/client/src/Common/AnalysisData/Plots/Sidebar/show/layoutview/ParametersView.js
  AnalysisPageServer/inst/htdocs/client/src/Common/AnalysisData/Plots/Sidebar/show/layoutview/SidebarView.js
  AnalysisPageServer/inst/htdocs/client/src/Common/AnalysisData/Plots/Sidebar/show/layoutview/parametersTemplate.html
  AnalysisPageServer/inst/htdocs/client/src/Common/AnalysisData/Plots/Sidebar/show/layoutview/sidebarTemplate.html
  AnalysisPageServer/inst/htdocs/client/src/Common/AnalysisData/Plots/Svg/download/SvgDownloadController.js
  AnalysisPageServer/inst/htdocs/client/src/Common/AnalysisData/Plots/Svg/show/PointDetailsShowController.js
  AnalysisPageServer/inst/htdocs/client/src/Common/AnalysisData/Plots/Svg/show/d3BrushTaggingController.js
  AnalysisPageServer/inst/htdocs/client/src/Common/AnalysisData/Plots/Svg/show/d3BrushZoomingController.js
  AnalysisPageServer/inst/htdocs/client/src/Common/AnalysisData/Plots/Svg/show/itemview/popupTemplate.html
  AnalysisPageServer/inst/htdocs/client/src/Common/AnalysisData/Tables/Tbody/show/TbodyShowController.js
  AnalysisPageServer/inst/htdocs/client/src/Common/AnalysisData/Tables/Tbody/show/itemview/TbodyView.js
  AnalysisPageServer/inst/htdocs/client/src/Common/AnalysisData/Tables/Tbody/show/itemview/chunkTemplate.html
  AnalysisPageServer/inst/htdocs/client/src/Common/AnalysisData/Tables/Tbody/show/itemview/template.html
  AnalysisPageServer/inst/htdocs/client/src/Common/AnalysisData/Tables/Thead/show/TheadShowController.js
  AnalysisPageServer/inst/htdocs/client/src/Common/AnalysisData/Tables/Thead/show/compositeview/TheadItemView.js
  AnalysisPageServer/inst/htdocs/client/src/Common/AnalysisData/Tables/Thead/show/compositeview/TheadView.js
  AnalysisPageServer/inst/htdocs/client/src/Common/AnalysisData/Tables/Thead/show/compositeview/itemTemplate.html
  AnalysisPageServer/inst/htdocs/client/src/Common/AnalysisData/Tables/Thead/show/compositeview/summaryTemplate.html
  AnalysisPageServer/inst/htdocs/client/src/Common/AnalysisData/Tables/Thead/show/compositeview/template.html
  AnalysisPageServer/inst/htdocs/client/src/Common/AnalysisData/Tables/download/TableDataDownloadController.js
  AnalysisPageServer/inst/htdocs/client/src/Common/AnalysisData/Tables/show/itemview/characterTemplate.html
  AnalysisPageServer/inst/htdocs/client/src/Common/AnalysisData/Tables/show/itemview/numericTemplate.html
  AnalysisPageServer/vignettes/jspm_packages/github/marionettejs/backbone.marionette@2.4.4/marionette-logo.png
  AnalysisPageServer/vignettes/jspm_packages/github/t0m/select2-bootstrap-css@1.4.6/_jekyll/fonts/glyphicons-halflings-regular.eot
  AnalysisPageServer/vignettes/jspm_packages/github/t0m/select2-bootstrap-css@1.4.6/_jekyll/fonts/glyphicons-halflings-regular.svg
  AnalysisPageServer/vignettes/jspm_packages/github/t0m/select2-bootstrap-css@1.4.6/_jekyll/fonts/glyphicons-halflings-regular.ttf
  AnalysisPageServer/vignettes/jspm_packages/github/t0m/select2-bootstrap-css@1.4.6/_jekyll/fonts/glyphicons-halflings-regular.woff
  AnalysisPageServer/vignettes/jspm_packages/github/t0m/select2-bootstrap-css@1.4.6/_jekyll/fonts/glyphicons-halflings-regular.woff2
  AnalysisPageServer/vignettes/jspm_packages/github/twbs/bootstrap@2.3.2/img/glyphicons-halflings-white.png
  AnalysisPageServer/vignettes/static-example/jspm_packages/github/RubaXa/Sortable@1.4.2/st/og-image.png
  AnalysisPageServer/vignettes/static-example/jspm_packages/github/marionettejs/backbone.marionette@2.4.4/marionette-logo.png
  AnalysisPageServer/vignettes/static-example/jspm_packages/github/select2/select2@3.5.4/select2-spinner.gif
  AnalysisPageServer/vignettes/static-example/jspm_packages/github/t0m/select2-bootstrap-css@1.4.6/_jekyll/fonts/glyphicons-halflings-regular.eot
  AnalysisPageServer/vignettes/static-example/jspm_packages/github/t0m/select2-bootstrap-css@1.4.6/_jekyll/fonts/glyphicons-halflings-regular.svg
  AnalysisPageServer/vignettes/static-example/jspm_packages/github/t0m/select2-bootstrap-css@1.4.6/_jekyll/fonts/glyphicons-halflings-regular.ttf
  AnalysisPageServer/vignettes/static-example/jspm_packages/github/t0m/select2-bootstrap-css@1.4.6/_jekyll/fonts/glyphicons-halflings-regular.woff
  AnalysisPageServer/vignettes/static-example/jspm_packages/github/t0m/select2-bootstrap-css@1.4.6/_jekyll/fonts/glyphicons-halflings-regular.woff2
  AnalysisPageServer/vignettes/static-example/jspm_packages/github/twbs/bootstrap@2.3.2/img/glyphicons-halflings-white.png
  AnalysisPageServer/vignettes/static-example/jspm_packages/github/twbs/bootstrap@2.3.2/img/glyphicons-halflings.png
  AnalysisPageServer/vignettes/static-example/jspm_packages/npm/font-awesome@4.7.0/fonts/fontawesome-webfont.eot
  AnalysisPageServer/vignettes/static-example/jspm_packages/npm/font-awesome@4.7.0/fonts/fontawesome-webfont.svg
  AnalysisPageServer/vignettes/static-example/jspm_packages/npm/font-awesome@4.7.0/fonts/fontawesome-webfont.ttf
  AnalysisPageServer/vignettes/static-example/jspm_packages/npm/font-awesome@4.7.0/fonts/fontawesome-webfont.woff
  AnalysisPageServer/vignettes/static-example/jspm_packages/npm/font-awesome@4.7.0/fonts/fontawesome-webfont.woff2
  AnalysisPageServer/vignettes/static-example2/jspm_packages/github/RubaXa/Sortable@1.4.2/st/og-image.png
  AnalysisPageServer/vignettes/static-example2/jspm_packages/github/marionettejs/backbone.marionette@2.4.4/marionette-logo.png
  AnalysisPageServer/vignettes/static-example2/jspm_packages/github/select2/select2@3.5.4/select2-spinner.gif
  AnalysisPageServer/vignettes/static-example2/jspm_packages/github/select2/select2@3.5.4/select2x2.png
  AnalysisPageServer/vignettes/static-example2/jspm_packages/github/t0m/select2-bootstrap-css@1.4.6/_jekyll/fonts/glyphicons-halflings-regular.eot
  AnalysisPageServer/vignettes/static-example2/jspm_packages/github/t0m/select2-bootstrap-css@1.4.6/_jekyll/fonts/glyphicons-halflings-regular.svg
  AnalysisPageServer/vignettes/static-example2/jspm_packages/github/t0m/select2-bootstrap-css@1.4.6/_jekyll/fonts/glyphicons-halflings-regular.ttf
  AnalysisPageServer/vignettes/static-example2/jspm_packages/github/t0m/select2-bootstrap-css@1.4.6/_jekyll/fonts/glyphicons-halflings-regular.woff
  AnalysisPageServer/vignettes/static-example2/jspm_packages/github/t0m/select2-bootstrap-css@1.4.6/_jekyll/fonts/glyphicons-halflings-regular.woff2
  AnalysisPageServer/vignettes/static-example2/jspm_packages/github/twbs/bootstrap@2.3.2/img/glyphicons-halflings-white.png
  AnalysisPageServer/vignettes/static-example2/jspm_packages/github/twbs/bootstrap@2.3.2/img/glyphicons-halflings.png
  AnalysisPageServer/vignettes/static-example2/jspm_packages/npm/font-awesome@4.7.0/fonts/fontawesome-webfont.eot
  AnalysisPageServer/vignettes/static-example2/jspm_packages/npm/font-awesome@4.7.0/fonts/fontawesome-webfont.svg
  AnalysisPageServer/vignettes/static-example2/jspm_packages/npm/font-awesome@4.7.0/fonts/fontawesome-webfont.ttf
  AnalysisPageServer/vignettes/static-example2/jspm_packages/npm/font-awesome@4.7.0/fonts/fontawesome-webfont.woff
  AnalysisPageServer/vignettes/static-example2/jspm_packages/npm/font-awesome@4.7.0/fonts/fontawesome-webfont.woff2
  AnalysisPageServer/vignettes/static-example3/jspm_packages/github/RubaXa/Sortable@1.4.2/st/og-image.png
  AnalysisPageServer/vignettes/static-example3/jspm_packages/github/marionettejs/backbone.marionette@2.4.4/marionette-logo.png
  AnalysisPageServer/vignettes/static-example3/jspm_packages/github/select2/select2@3.5.4/select2-spinner.gif
  AnalysisPageServer/vignettes/static-example3/jspm_packages/github/select2/select2@3.5.4/select2x2.png
  AnalysisPageServer/vignettes/static-example3/jspm_packages/github/t0m/select2-bootstrap-css@1.4.6/_jekyll/fonts/glyphicons-halflings-regular.eot
  AnalysisPageServer/vignettes/static-example3/jspm_packages/github/t0m/select2-bootstrap-css@1.4.6/_jekyll/fonts/glyphicons-halflings-regular.svg
  AnalysisPageServer/vignettes/static-example3/jspm_packages/github/t0m/select2-bootstrap-css@1.4.6/_jekyll/fonts/glyphicons-halflings-regular.ttf
  AnalysisPageServer/vignettes/static-example3/jspm_packages/github/t0m/select2-bootstrap-css@1.4.6/_jekyll/fonts/glyphicons-halflings-regular.woff
  AnalysisPageServer/vignettes/static-example3/jspm_packages/github/t0m/select2-bootstrap-css@1.4.6/_jekyll/fonts/glyphicons-halflings-regular.woff2
  AnalysisPageServer/vignettes/static-example3/jspm_packages/github/twbs/bootstrap@2.3.2/img/glyphicons-halflings-white.png
  AnalysisPageServer/vignettes/static-example3/jspm_packages/github/twbs/bootstrap@2.3.2/img/glyphicons-halflings.png
  AnalysisPageServer/vignettes/static-example3/jspm_packages/npm/font-awesome@4.7.0/fonts/fontawesome-webfont.eot
  AnalysisPageServer/vignettes/static-example3/jspm_packages/npm/font-awesome@4.7.0/fonts/fontawesome-webfont.svg
  AnalysisPageServer/vignettes/static-example3/jspm_packages/npm/font-awesome@4.7.0/fonts/fontawesome-webfont.ttf
  AnalysisPageServer/vignettes/static-example3/jspm_packages/npm/font-awesome@4.7.0/fonts/fontawesome-webfont.woff
  AnalysisPageServer/vignettes/static-example3/jspm_packages/npm/font-awesome@4.7.0/fonts/fontawesome-webfont.woff2
  AnalysisPageServer/vignettes/static-example4/jspm_packages/github/RubaXa/Sortable@1.4.2/st/og-image.png
  AnalysisPageServer/vignettes/static-example4/jspm_packages/github/marionettejs/backbone.marionette@2.4.4/marionette-logo.png
  AnalysisPageServer/vignettes/static-example4/jspm_packages/github/select2/select2@3.5.4/select2-spinner.gif
  AnalysisPageServer/vignettes/static-example4/jspm_packages/github/select2/select2@3.5.4/select2x2.png
  AnalysisPageServer/vignettes/static-example4/jspm_packages/github/t0m/select2-bootstrap-css@1.4.6/_jekyll/fonts/glyphicons-halflings-regular.eot
  AnalysisPageServer/vignettes/static-example4/jspm_packages/github/t0m/select2-bootstrap-css@1.4.6/_jekyll/fonts/glyphicons-halflings-regular.svg
  AnalysisPageServer/vignettes/static-example4/jspm_packages/github/t0m/select2-bootstrap-css@1.4.6/_jekyll/fonts/glyphicons-halflings-regular.ttf
  AnalysisPageServer/vignettes/static-example4/jspm_packages/github/t0m/select2-bootstrap-css@1.4.6/_jekyll/fonts/glyphicons-halflings-regular.woff
  AnalysisPageServer/vignettes/static-example4/jspm_packages/github/t0m/select2-bootstrap-css@1.4.6/_jekyll/fonts/glyphicons-halflings-regular.woff2
  AnalysisPageServer/vignettes/static-example4/jspm_packages/github/twbs/bootstrap@2.3.2/img/glyphicons-halflings-white.png
  AnalysisPageServer/vignettes/static-example4/jspm_packages/github/twbs/bootstrap@2.3.2/img/glyphicons-halflings.png
  AnalysisPageServer/vignettes/static-example4/jspm_packages/npm/font-awesome@4.7.0/fonts/fontawesome-webfont.eot
  AnalysisPageServer/vignettes/static-example4/jspm_packages/npm/font-awesome@4.7.0/fonts/fontawesome-webfont.svg
  AnalysisPageServer/vignettes/static-example4/jspm_packages/npm/font-awesome@4.7.0/fonts/fontawesome-webfont.ttf
  AnalysisPageServer/vignettes/static-example4/jspm_packages/npm/font-awesome@4.7.0/fonts/fontawesome-webfont.woff
  AnalysisPageServer/vignettes/static-example4/jspm_packages/npm/font-awesome@4.7.0/fonts/fontawesome-webfont.woff2
  AnalysisPageServer/inst/doc/static-example/jspm_packages/github/marionettejs/backbone.marionette@2.4.4
  AnalysisPageServer/inst/doc/static-example/jspm_packages/github/t0m/select2-bootstrap-css@1.4.6/_jekyll/fonts
  AnalysisPageServer/inst/doc/static-example2/jspm_packages/github/marionettejs/backbone.marionette@2.4.4
  AnalysisPageServer/inst/doc/static-example2/jspm_packages/github/t0m/select2-bootstrap-css@1.4.6/_jekyll/fonts
  AnalysisPageServer/inst/doc/static-example3/jspm_packages/github/marionettejs/backbone.marionette@2.4.4
  AnalysisPageServer/inst/doc/static-example3/jspm_packages/github/t0m/select2-bootstrap-css@1.4.6/_jekyll/fonts
  AnalysisPageServer/inst/doc/static-example4/jspm_packages/github/marionettejs/backbone.marionette@2.4.4
  AnalysisPageServer/inst/doc/static-example4/jspm_packages/github/t0m/select2-bootstrap-css@1.4.6/_jekyll/fonts
  AnalysisPageServer/inst/htdocs/client/dist-aps/jspm_packages/github/marionettejs/backbone.marionette@2.4.4
  AnalysisPageServer/inst/htdocs/client/dist-aps/jspm_packages/github/t0m/select2-bootstrap-css@1.4.6/_jekyll/fonts
  AnalysisPageServer/inst/htdocs/client/dist-apss/jspm_packages/github/marionettejs/backbone.marionette@2.4.4
  AnalysisPageServer/inst/htdocs/client/dist-apss/jspm_packages/github/t0m/select2-bootstrap-css@1.4.6/_jekyll/fonts
  AnalysisPageServer/inst/htdocs/client/src/AnalysisPageServer/Pages/Landing/ToolOverview/show/itemview
  AnalysisPageServer/inst/htdocs/client/src/AnalysisPageServer/Pages/Landing/ToolOverview/show/layoutview
  AnalysisPageServer/inst/htdocs/client/src/AnalysisPageServerStatic/Pages/Datasets/show/collectionview
  AnalysisPageServer/vignettes/static-example/jspm_packages/github/marionettejs/backbone.marionette@2.4.4
  AnalysisPageServer/vignettes/static-example/jspm_packages/github/t0m/select2-bootstrap-css@1.4.6/_jekyll/fonts
  AnalysisPageServer/vignettes/static-example2/jspm_packages/github/marionettejs/backbone.marionette@2.4.4
  AnalysisPageServer/vignettes/static-example2/jspm_packages/github/t0m/select2-bootstrap-css@1.4.6/_jekyll/fonts
  AnalysisPageServer/vignettes/static-example3/jspm_packages/github/marionettejs/backbone.marionette@2.4.4
  AnalysisPageServer/vignettes/static-example3/jspm_packages/github/t0m/select2-bootstrap-css@1.4.6/_jekyll/fonts
  AnalysisPageServer/vignettes/static-example4/jspm_packages/github/marionettejs/backbone.marionette@2.4.4
  AnalysisPageServer/vignettes/static-example4/jspm_packages/github/t0m/select2-bootstrap-css@1.4.6/_jekyll/fonts

Tarballs are only required to store paths of up to 100 bytes and cannot
store those of more than 256 bytes, with restrictions including to 100
bytes for the final component.
See section ‘Package structure’ in the ‘Writing R Extensions’ manual.
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘AnalysisPageServer’ can be installed ... WARNING
Found the following significant warnings:
  Warning: Package 'AnalysisPageServer' is deprecated and will be removed from
See ‘/home/biocbuild/bbs-3.11-bioc/meat/AnalysisPageServer.Rcheck/00install.out’ for details.
* checking installed package size ... NOTE
  installed size is 10.5Mb
  sub-directories of 1Mb or more:
    htdocs   8.6Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
'library' or 'require' calls in package code:
  ‘FastRWeb’ ‘RUnit’ ‘fork’
  Please use :: or requireNamespace() instead.
  See section 'Suggested packages' in the 'Writing R Extensions' manual.
Unexported object imported by a ':::' call: ‘log4r:::INFO’
  See the note in ?`:::` about the use of this operator.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
.head.string: no visible global function definition for ‘head’
.inject.file.params: no visible global function definition for ‘str’
.inject.file.params : <anonymous>: no visible global function
  definition for ‘str’
.prepare.params: no visible binding for global variable ‘svg’
check.memory: no visible global function definition for
  ‘capture.output’
check.same.svgs: no visible global function definition for
  ‘checkEquals’
checkPackageVersion: no visible global function definition for
  ‘packageVersion’
checkRookForkForVignettes: no visible binding for '<<-' assignment to
  ‘no.rook.fork.msg’
checkRookForkForVignettes : <anonymous>: no visible binding for global
  variable ‘no.rook.fork.msg’
checkRookForkForVignettes: no visible binding for global variable
  ‘no.rook.fork.msg’
client.ip: no visible binding for global variable ‘SERVER’
embed.APS.dataset: no visible binding for global variable ‘svg’
embed.APS.dataset: no visible global function definition for ‘dev.off’
execute.handler: no visible binding for global variable ‘svg’
execute.handler: no visible global function definition for ‘dev.cur’
execute.handler: no visible global function definition for ‘dev.off’
execute.handler: no visible global function definition for ‘dev.list’
getTraceback: no visible global function definition for
  ‘capture.output’
inches.png: no visible global function definition for ‘png’
new.FastRWeb.analysis.page.run : handler: no visible binding for '<<-'
  assignment to ‘GET’
new.FastRWeb.analysis.page.run : handler: no visible global function
  definition for ‘parse.multipart’
new.FastRWeb.analysis.page.run : handler: no visible global function
  definition for ‘capture.output’
new.FastRWeb.analysis.page.run : handler: no visible binding for global
  variable ‘request’
new.FastRWeb.analysis.page.run : handler: no visible binding for '<<-'
  assignment to ‘POST’
new.FastRWeb.analysis.page.run : handler: no visible binding for '<<-'
  assignment to ‘SERVER’
new.FastRWeb.analysis.page.run : handler: no visible binding for '<<-'
  assignment to ‘FILES’
new.FastRWeb.analysis.page.run : handler: no visible binding for '<<-'
  assignment to ‘setContentType’
new.FastRWeb.analysis.page.run : handler: no visible binding for '<<-'
  assignment to ‘setHeader’
new.FastRWeb.analysis.page.run : handler: no visible binding for '<<-'
  assignment to ‘sendBin’
new.FastRWeb.analysis.page.run : handler: no visible binding for global
  variable ‘SERVER’
new.FastRWeb.analysis.page.run : handler: no visible global function
  definition for ‘WebResult’
new.rook.analysis.page.app : handler: no visible binding for '<<-'
  assignment to ‘POST’
new.rook.analysis.page.app : handler: no visible binding for '<<-'
  assignment to ‘GET’
new.rook.analysis.page.app : handler: no visible binding for '<<-'
  assignment to ‘SERVER’
new.rook.analysis.page.app : handler: no visible binding for '<<-'
  assignment to ‘FILES’
new.rook.analysis.page.app : handler: no visible binding for '<<-'
  assignment to ‘setContentType’
new.rook.analysis.page.app : handler: no visible binding for '<<-'
  assignment to ‘setHeader’
new.rook.analysis.page.app : handler: no visible binding for '<<-'
  assignment to ‘sendBin’
new.rook.analysis.page.app : handler: no visible global function
  definition for ‘capture.output’
new.rook.analysis.page.app: no visible binding for global variable
  ‘App’
rapache.app.from.registry : <anonymous>: no visible binding for global
  variable ‘GET’
rapache.app.from.registry : <anonymous>: no visible binding for global
  variable ‘POST’
rapache.app.from.registry : <anonymous>: no visible binding for global
  variable ‘FILES’
rapache.app.from.registry : <anonymous>: no visible global function
  definition for ‘is.textarea.wrap.request’
rapache.app.from.registry : <anonymous>: no visible global function
  definition for ‘setContentType’
rapache.app.from.registry : <anonymous>: no visible global function
  definition for ‘setHeader’
rapache.app.from.registry : <anonymous>: no visible binding for global
  variable ‘in.analysis’
rapache.app.from.registry : <anonymous>: no visible binding for global
  variable ‘analysis.id’
rapache.app.from.registry : <anonymous>: no visible binding for '<<-'
  assignment to ‘analysis.id’
rapache.app.from.registry : <anonymous>: no visible binding for '<<-'
  assignment to ‘in.analysis’
rapache.app.from.registry : <anonymous>: no visible binding for global
  variable ‘events’
rapache.app.from.registry : <anonymous>: no visible binding for global
  variable ‘plot.file’
rapache.app.from.registry : <anonymous>: no visible global function
  definition for ‘sendBin’
rapache.app.from.registry : <anonymous> : <anonymous>: no visible
  global function definition for ‘process.response’
rapache.app.from.registry : <anonymous>: no visible global function
  definition for ‘params’
rapache.app.from.registry : <anonymous>: no visible global function
  definition for ‘clean.tmpdir’
rapache.app.from.registry : <anonymous>: no visible global function
  definition for ‘file.params’
rapache.app.from.registry : <anonymous>: no visible binding for '<<-'
  assignment to ‘plot.file’
rapache.app.from.registry : <anonymous>: no visible global function
  definition for ‘temp.plot.file’
rapache.app.from.registry : <anonymous>: no visible binding for global
  variable ‘SERVER’
rapache.app.from.registry : <anonymous>: no visible binding for global
  variable ‘analysis’
rapache.app.from.registry : <anonymous>: no visible binding for global
  variable ‘brand’
rapache.app.from.registry : <anonymous>: no visible binding for global
  variable ‘page.params’
rapache.app.from.registry : <anonymous>: no visible binding for global
  variable ‘all.pages’
rapache.app.from.registry : <anonymous>: no visible binding for global
  variable ‘status’
rapache.app.from.registry : <anonymous>: no visible binding for global
  variable ‘retrieve’
rapache.app.from.registry : <anonymous>: no visible global function
  definition for ‘handlers’
rapache.app.from.registry : <anonymous>: no visible global function
  definition for ‘capture.output’
rapache.app.from.registry : <anonymous>: no visible global function
  definition for ‘dev.list’
rapache.app.from.registry : <anonymous>: no visible global function
  definition for ‘sessionInfo’
rapache.app.from.registry : <anonymous>: no visible global function
  definition for ‘resources’
rapache.app.from.registry : <anonymous> : <anonymous>: no visible
  global function definition for ‘handler’
startRookAnalysisPageServer: no visible binding for '<<-' assignment to
  ‘server.pid’
startRookAnalysisPageServer: no visible binding for global variable
  ‘server.pid’
test.package: no visible global function definition for
  ‘defineTestSuite’
test.package: no visible global function definition for ‘runTestSuite’
test.package: no visible global function definition for
  ‘printTextProtocol’
Undefined global functions or variables:
  App FILES GET POST SERVER WebResult all.pages analysis analysis.id
  brand capture.output checkEquals clean.tmpdir defineTestSuite dev.cur
  dev.list dev.off events file.params handler handlers head in.analysis
  is.textarea.wrap.request no.rook.fork.msg packageVersion page.params
  params parse.multipart plot.file png printTextProtocol
  process.response request resources retrieve runTestSuite sendBin
  server.pid sessionInfo setContentType setHeader status str svg
  temp.plot.file
Consider adding
  importFrom("grDevices", "dev.cur", "dev.list", "dev.off", "png", "svg")
  importFrom("utils", "capture.output", "head", "packageVersion",
             "sessionInfo", "str")
to your NAMESPACE file.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for GNU extensions in Makefiles ... OK
* checking include directives in Makefiles ... OK
* checking compiled code ... NOTE
Note: information on .o files is not available
* checking files in ‘vignettes’ ... NOTE
The following directory looks like a leftover from 'knitr':
  ‘figure’
Please remove from your package.
* checking examples ... ERROR
Running examples in ‘AnalysisPageServer-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: new.datanode.array
> ### Title: new.datanode.array
> ### Aliases: new.datanode.array
> 
> ### ** Examples
> 
> html.node <- example(new.datanode.html)$value

nw.dt.> new.datanode.html(name = "shakespeare",
nw.dt.+                   value = "<i>Shall I compute thee to a summer's data?</i>")
$type
[1] "html"

$name
[1] "shakespeare"

$label
[1] "shakespeare"

$description
[1] "shakespeare"

$value
[1] "<i>Shall I compute thee to a summer's data?</i>"

attr(,"class")
[1] "AnalysisPageDataNode"
> simple.node <- example(new.datanode.simple)$value

nw.dt.> new.datanode.simple(name = "x", value = 100)
$type
[1] "simple"

$name
[1] "x"

$label
[1] "x"

$description
[1] "x"

$value
[1] 100

attr(,"class")
[1] "AnalysisPageDataNode"
> new.datanode.array(name = "arr", children = list(html.node, simple.node))
 ----------- FAILURE REPORT -------------- 
 --- failure: length > 1 in coercion to logical ---
 --- srcref --- 
: 
 --- package (from environment) --- 
AnalysisPageServer
 --- call from context --- 
stopifnot(length(children) == 0 || sapply(children, is, "AnalysisPageDataNode"))
 --- call from argument --- 
length(children) == 0 || sapply(children, is, "AnalysisPageDataNode")
 --- R stacktrace ---
where 1: stopifnot(length(children) == 0 || sapply(children, is, "AnalysisPageDataNode"))
where 2: new.datanode.array(name = "arr", children = list(html.node, simple.node))

 --- value of length: 2 type: logical ---
[1] TRUE TRUE
 --- function from context --- 
function (..., exprs, exprObject, local = TRUE) 
{
    n <- ...length()
    if ((has.e <- !missing(exprs)) || !missing(exprObject)) {
        if (n || (has.e && !missing(exprObject))) 
            stop("Only one of 'exprs', 'exprObject' or expressions, not more")
        envir <- if (isTRUE(local)) 
            parent.frame()
        else if (isFALSE(local)) 
            .GlobalEnv
        else if (is.environment(local)) 
            local
        else stop("'local' must be TRUE, FALSE or an environment")
        E1 <- if (has.e && is.call(exprs <- substitute(exprs))) 
            exprs[[1]]
        cl <- if (is.symbol(E1) && E1 == quote(`{`)) {
            exprs[[1]] <- quote(stopifnot)
            exprs
        }
        else as.call(c(quote(stopifnot), if (!has.e) exprObject else as.expression(exprs)))
        names(cl) <- NULL
        return(eval(cl, envir = envir))
    }
    Dparse <- function(call, cutoff = 60L) {
        ch <- deparse(call, width.cutoff = cutoff)
        if (length(ch) > 1L) 
            paste(ch[1L], "....")
        else ch
    }
    head <- function(x, n = 6L) x[seq_len(if (n < 0L) max(length(x) + 
        n, 0L) else min(n, length(x)))]
    abbrev <- function(ae, n = 3L) paste(c(head(ae, n), if (length(ae) > 
        n) "...."), collapse = "\n  ")
    for (i in seq_len(n)) {
        r <- ...elt(i)
        if (!(is.logical(r) && !anyNA(r) && all(r))) {
            dots <- match.call()[-1L]
            if (is.null(msg <- names(dots)) || !nzchar(msg <- msg[i])) {
                cl.i <- dots[[i]]
                msg <- if (is.call(cl.i) && identical(cl.i[[1]], 
                  quote(all.equal)) && (is.null(ni <- names(cl.i)) || 
                  length(cl.i) == 3L || length(cl.i <- cl.i[!nzchar(ni)]) == 
                  3L)) 
                  sprintf(gettext("%s and %s are not equal:\n  %s"), 
                    Dparse(cl.i[[2]]), Dparse(cl.i[[3]]), abbrev(r))
                else sprintf(ngettext(length(r), "%s is not TRUE", 
                  "%s are not all TRUE"), Dparse(cl.i))
            }
            stop(simpleError(msg, call = if (p <- sys.parent(1L)) 
                sys.call(p)))
        }
    }
    invisible()
}
<bytecode: 0x559e77c76570>
<environment: namespace:base>
 --- function search by body ---
Function stopifnot in namespace base has this body.
 ----------- END OF FAILURE REPORT -------------- 
Fatal error: length > 1 in coercion to logical
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘unit_tests.R’
 ERROR
Running the tests in ‘tests/unit_tests.R’ failed.
Last 13 lines of output:
                  else sprintf(ngettext(length(r), "%s is not TRUE", 
                    "%s are not all TRUE"), Dparse(cl.i))
              }
              stop(simpleError(msg, call = if (p <- sys.parent(1L)) 
                  sys.call(p)))
          }
      }
      invisible()
  }
  <bytecode: 0x55bc6f733770>
  <environment: namespace:base>
   --- function search by body ---
  Function stopifnot in namespace base has this body.
   ----------- END OF FAILURE REPORT -------------- 
  Fatal error: length > 1 in coercion to logical
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 2 ERRORs, 1 WARNING, 7 NOTEs
See
  ‘/home/biocbuild/bbs-3.11-bioc/meat/AnalysisPageServer.Rcheck/00check.log’
for details.

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.11-bioc/R/bin/R CMD INSTALL AnalysisPageServer
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.11-bioc/R/library’
* installing *source* package ‘AnalysisPageServer’ ...
** using staged installation
** libs
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.11-bioc/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -Wall -c AnalysisPageSVG.cpp -o AnalysisPageSVG.o
AnalysisPageSVG.cpp: In function ‘int matchPlotPoints(XMLElementList, std::deque<double>, std::deque<double>, double, int, int)’:
AnalysisPageSVG.cpp:154:8: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
   if(n != y.size())  throw "x and y have different lengths";
      ~~^~~~~~~~~~~
AnalysisPageSVG.cpp:157:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
   if(els.size() < start + n)  {
      ~~~~~~~~~~~^~~~~~~~~~~
AnalysisPageSVG.cpp:194:22: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     for(int i = 0; i < x.size(); i++)  {
                    ~~^~~~~~~~~~
AnalysisPageSVG.cpp:210:24: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
       for(int i = 0; i < els_x.size(); i++)  {
                      ~~^~~~~~~~~~~~~~
AnalysisPageSVG.cpp:215:24: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
       for(int i = 0; i < els_y.size(); i++)  {
                      ~~^~~~~~~~~~~~~~
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.11-bioc/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -Wall -c R_init_AnalysisPageServer.cpp -o R_init_AnalysisPageServer.o
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.11-bioc/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -Wall -c SearchReplace2.cpp -o SearchReplace2.o
gcc -I"/home/biocbuild/bbs-3.11-bioc/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -Wall -c catch.c -o catch.o
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.11-bioc/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -Wall -c cor.cpp -o cor.o
cor.cpp: In function ‘double basic_cor(const std::deque<double>&, const std::deque<double>&)’:
cor.cpp:24:8: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
   if(n != y.size())  throw "different sizes";
      ~~^~~~~~~~~~~
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.11-bioc/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -Wall -c tinyxml2.cpp -o tinyxml2.o
g++ -std=gnu++11 -shared -L/home/biocbuild/bbs-3.11-bioc/R/lib -L/usr/local/lib -o AnalysisPageServer.so AnalysisPageSVG.o R_init_AnalysisPageServer.o SearchReplace2.o catch.o cor.o tinyxml2.o -L/home/biocbuild/bbs-3.11-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.11-bioc/R/library/00LOCK-AnalysisPageServer/00new/AnalysisPageServer/libs
** R
** inst
** byte-compile and prepare package for lazy loading
While loading AnalysisPageServer: urlEncode not found, providing a pure R implementation
While loading AnalysisPageServer: urlDecode not found, providing a pure R implementation
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning: Package 'AnalysisPageServer' is deprecated and will be removed from
  Bioconductor version 3.12
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
Warning: Package 'AnalysisPageServer' is deprecated and will be removed from
  Bioconductor version 3.12
** testing if installed package keeps a record of temporary installation path
* DONE (AnalysisPageServer)

R version 4.0.3 (2020-10-10) -- "Bunny-Wunnies Freak Out"
Copyright (C) 2020 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> AnalysisPageServer:::test.package()
Loading required package: RUnit
Loading required package: AnalysisPageServer

Pattern = /^test.*R$/

Matching test files:
 /home/biocbuild/bbs-3.11-bioc/R/library/AnalysisPageServer/unitTests/test.analysis.page.R
  /home/biocbuild/bbs-3.11-bioc/R/library/AnalysisPageServer/unitTests/test.annotate.R
  /home/biocbuild/bbs-3.11-bioc/R/library/AnalysisPageServer/unitTests/test.aps.urlEncode.R
  /home/biocbuild/bbs-3.11-bioc/R/library/AnalysisPageServer/unitTests/test.data.R
  /home/biocbuild/bbs-3.11-bioc/R/library/AnalysisPageServer/unitTests/test.error.R
  /home/biocbuild/bbs-3.11-bioc/R/library/AnalysisPageServer/unitTests/test.eval.within.time.R
  /home/biocbuild/bbs-3.11-bioc/R/library/AnalysisPageServer/unitTests/test.events.R
  /home/biocbuild/bbs-3.11-bioc/R/library/AnalysisPageServer/unitTests/test.filter.widget.R
  /home/biocbuild/bbs-3.11-bioc/R/library/AnalysisPageServer/unitTests/test.knitAPS.R
  /home/biocbuild/bbs-3.11-bioc/R/library/AnalysisPageServer/unitTests/test.links.R
  /home/biocbuild/bbs-3.11-bioc/R/library/AnalysisPageServer/unitTests/test.memory.R
  /home/biocbuild/bbs-3.11-bioc/R/library/AnalysisPageServer/unitTests/test.messages.R
  /home/biocbuild/bbs-3.11-bioc/R/library/AnalysisPageServer/unitTests/test.param.transformer.R
  /home/biocbuild/bbs-3.11-bioc/R/library/AnalysisPageServer/unitTests/test.params.R
  /home/biocbuild/bbs-3.11-bioc/R/library/AnalysisPageServer/unitTests/test.persistent.params.R
  /home/biocbuild/bbs-3.11-bioc/R/library/AnalysisPageServer/unitTests/test.plot.pars.transformer.R
  /home/biocbuild/bbs-3.11-bioc/R/library/AnalysisPageServer/unitTests/test.rapache.R
  /home/biocbuild/bbs-3.11-bioc/R/library/AnalysisPageServer/unitTests/test.registry.R
  /home/biocbuild/bbs-3.11-bioc/R/library/AnalysisPageServer/unitTests/test.remove.old.files.R
  /home/biocbuild/bbs-3.11-bioc/R/library/AnalysisPageServer/unitTests/test.response.R
  /home/biocbuild/bbs-3.11-bioc/R/library/AnalysisPageServer/unitTests/test.rook.analysis.page.server.R
  /home/biocbuild/bbs-3.11-bioc/R/library/AnalysisPageServer/unitTests/test.search.replace.R
  /home/biocbuild/bbs-3.11-bioc/R/library/AnalysisPageServer/unitTests/test.static.analysis.page.R
  /home/biocbuild/bbs-3.11-bioc/R/library/AnalysisPageServer/unitTests/test.tests.R
  /home/biocbuild/bbs-3.11-bioc/R/library/AnalysisPageServer/unitTests/test.validate.param.list.R 



Executing test function test.analysis.page  ... 
exct.h> page <- new.analysis.page(AnalysisPageServer:::sine.handler)

exct.h> plot.file <- tempfile(fileext = ".svg")

exct.h> plist <- lapply(list(xmin=-2*pi, xmax=2*pi, n= 50), rjson::toJSON)

exct.h> sine.data <- AnalysisPageServer:::execute.handler(page, plist, plot.file=plot.file)

exct.h> # now sine.data is an AnnotatedDataFrame
exct.h> 
exct.h> 
exct.h> 
 done successfully.



Executing test function test.annotate.data.frame  ...  done successfully.



Executing test function test.inject.file.params  ...  done successfully.



Executing test function test.prepare.params  ...  done successfully.



Executing test function test.annotator.heatmap  ...  done successfully.



Executing test function test.annotator.simple  ...  done successfully.



Executing test function test.double.annotation  ...  done successfully.



Executing test function test.uniquify.ids  ...  done successfully.



Executing test function test.aps.urlEncode  ...  done successfully.



Executing test function test.data.frame.to.json  ...  done successfully.



Executing test function test.data.nodes  ...  ----------- FAILURE REPORT -------------- 
 --- failure: length > 1 in coercion to logical ---
 --- srcref --- 
: 
 --- package (from environment) --- 
AnalysisPageServer
 --- call from context --- 
stopifnot(length(children) == 0 || sapply(children, is, "AnalysisPageDataNode"))
 --- call from argument --- 
length(children) == 0 || sapply(children, is, "AnalysisPageDataNode")
 --- R stacktrace ---
where 1: stopifnot(length(children) == 0 || sapply(children, is, "AnalysisPageDataNode"))
where 2: new.datanode.array(name = "baz", children = list(n1, n2))
where 3: eval(call)
where 4: eval(got <- eval(call))
where 5: eval(call)
where 6: doTryCatch(return(expr), name, parentenv, handler)
where 7: tryCatchOne(expr, names, parentenv, handlers[[1L]])
where 8: tryCatchList(expr, classes, parentenv, handlers)
where 9: tryCatch({
    value <- eval(call)
    list(TRUE, value)
}, error = function(e) {
    list(FALSE, e$message)
})
where 10: lives.ok(eval(got <- eval(call)), name)
where 11: test.datanode(new.datanode.array(name = "baz", children = list(n1, 
    n2)), list(type = "array", name = "baz", label = "baz", description = "baz", 
    value = list(n1, n2)))
where 12: func()
where 13: system.time(func(), gcFirst = RUnitEnv$.gcBeforeTest)
where 14: doTryCatch(return(expr), name, parentenv, handler)
where 15: tryCatchOne(expr, names, parentenv, handlers[[1L]])
where 16: tryCatchList(expr, classes, parentenv, handlers)
where 17: tryCatch(expr, error = function(e) {
    call <- conditionCall(e)
    if (!is.null(call)) {
        if (identical(call[[1L]], quote(doTryCatch))) 
            call <- sys.call(-4L)
        dcall <- deparse(call)[1L]
        prefix <- paste("Error in", dcall, ": ")
        LONG <- 75L
        sm <- strsplit(conditionMessage(e), "\n")[[1L]]
        w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w")
        if (is.na(w)) 
            w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], 
                type = "b")
        if (w > LONG) 
            prefix <- paste0(prefix, "\n  ")
    }
    else prefix <- "Error : "
    msg <- paste0(prefix, conditionMessage(e), "\n")
    .Internal(seterrmessage(msg[1L]))
    if (!silent && isTRUE(getOption("show.error.messages"))) {
        cat(msg, file = outFile)
        .Internal(printDeferredWarnings())
    }
    invisible(structure(msg, class = "try-error", condition = e))
})
where 18: try(system.time(func(), gcFirst = RUnitEnv$.gcBeforeTest))
where 19: .executeTestCase(funcName, envir = sandbox, setUpFunc = .setUp, 
    tearDownFunc = .tearDown)
where 20: .sourceTestFile(testFile, testSuite$testFuncRegexp)
where 21: runTestSuite(suite, verbose = TRUE)
where 22: AnalysisPageServer:::test.package()

 --- value of length: 2 type: logical ---
[1] TRUE TRUE
 --- function from context --- 
function (..., exprs, exprObject, local = TRUE) 
{
    n <- ...length()
    if ((has.e <- !missing(exprs)) || !missing(exprObject)) {
        if (n || (has.e && !missing(exprObject))) 
            stop("Only one of 'exprs', 'exprObject' or expressions, not more")
        envir <- if (isTRUE(local)) 
            parent.frame()
        else if (isFALSE(local)) 
            .GlobalEnv
        else if (is.environment(local)) 
            local
        else stop("'local' must be TRUE, FALSE or an environment")
        E1 <- if (has.e && is.call(exprs <- substitute(exprs))) 
            exprs[[1]]
        cl <- if (is.symbol(E1) && E1 == quote(`{`)) {
            exprs[[1]] <- quote(stopifnot)
            exprs
        }
        else as.call(c(quote(stopifnot), if (!has.e) exprObject else as.expression(exprs)))
        names(cl) <- NULL
        return(eval(cl, envir = envir))
    }
    Dparse <- function(call, cutoff = 60L) {
        ch <- deparse(call, width.cutoff = cutoff)
        if (length(ch) > 1L) 
            paste(ch[1L], "....")
        else ch
    }
    head <- function(x, n = 6L) x[seq_len(if (n < 0L) max(length(x) + 
        n, 0L) else min(n, length(x)))]
    abbrev <- function(ae, n = 3L) paste(c(head(ae, n), if (length(ae) > 
        n) "...."), collapse = "\n  ")
    for (i in seq_len(n)) {
        r <- ...elt(i)
        if (!(is.logical(r) && !anyNA(r) && all(r))) {
            dots <- match.call()[-1L]
            if (is.null(msg <- names(dots)) || !nzchar(msg <- msg[i])) {
                cl.i <- dots[[i]]
                msg <- if (is.call(cl.i) && identical(cl.i[[1]], 
                  quote(all.equal)) && (is.null(ni <- names(cl.i)) || 
                  length(cl.i) == 3L || length(cl.i <- cl.i[!nzchar(ni)]) == 
                  3L)) 
                  sprintf(gettext("%s and %s are not equal:\n  %s"), 
                    Dparse(cl.i[[2]]), Dparse(cl.i[[3]]), abbrev(r))
                else sprintf(ngettext(length(r), "%s is not TRUE", 
                  "%s are not all TRUE"), Dparse(cl.i))
            }
            stop(simpleError(msg, call = if (p <- sys.parent(1L)) 
                sys.call(p)))
        }
    }
    invisible()
}
<bytecode: 0x55bc6f733770>
<environment: namespace:base>
 --- function search by body ---
Function stopifnot in namespace base has this body.
 ----------- END OF FAILURE REPORT -------------- 
Fatal error: length > 1 in coercion to logical