Back to Multiple platform build/check report for BioC 3.11 |
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This page was generated on 2020-10-17 11:58:04 -0400 (Sat, 17 Oct 2020).
TO THE DEVELOPERS/MAINTAINERS OF THE ASpli PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 92/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
ASpli 1.14.0 Estefania Mancini
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | [ OK ] | OK |
Package: ASpli |
Version: 1.14.0 |
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:ASpli.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings ASpli_1.14.0.tar.gz |
StartedAt: 2020-10-16 22:44:59 -0400 (Fri, 16 Oct 2020) |
EndedAt: 2020-10-16 23:00:33 -0400 (Fri, 16 Oct 2020) |
EllapsedTime: 934.0 seconds |
RetCode: 0 |
Status: OK |
CheckDir: ASpli.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:ASpli.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings ASpli_1.14.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.11-bioc/meat/ASpli.Rcheck’ * using R version 4.0.3 (2020-10-10) * using platform: x86_64-apple-darwin17.0 (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘ASpli/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘ASpli’ version ‘1.14.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘ASpli’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking sizes of PDF files under ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed mergeBinDUAS-method 14.227 0.045 14.290 ASpli-package 12.866 0.398 13.395 AsDiscover-methods 10.734 0.120 10.868 subset-methods 10.081 0.093 10.611 containsJunctions-function 8.441 0.032 8.479 DUreport 8.372 0.038 8.423 junctionDUreport 8.312 0.042 8.448 DUreportBinSplice-method 8.147 0.038 8.195 filterDU-method 8.025 0.035 8.071 rds 7.884 0.036 7.935 readCounts 7.757 0.030 7.796 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
ASpli.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL ASpli ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.0/Resources/library’ * installing *source* package ‘ASpli’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ASpli)
ASpli.Rcheck/ASpli-Ex.timings
name | user | system | elapsed | |
ASpli-package | 12.866 | 0.398 | 13.395 | |
AsDiscover-methods | 10.734 | 0.120 | 10.868 | |
DUreport | 8.372 | 0.038 | 8.423 | |
DUreportBinSplice-method | 8.147 | 0.038 | 8.195 | |
acc_AS | 0.036 | 0.004 | 0.042 | |
acc_DU | 0.013 | 0.002 | 0.015 | |
acc_counts | 0.027 | 0.004 | 0.031 | |
acc_features | 0.462 | 0.001 | 0.465 | |
binGenome | 4.209 | 0.019 | 4.232 | |
containsJunctions-function | 8.441 | 0.032 | 8.479 | |
example_data | 0.832 | 0.016 | 0.854 | |
filterDU-method | 8.025 | 0.035 | 8.071 | |
getConditions-function | 0.009 | 0.001 | 0.010 | |
junctionDUreport | 8.312 | 0.042 | 8.448 | |
loadBAM | 0.212 | 0.004 | 0.217 | |
mergeBinDUAS-method | 14.227 | 0.045 | 14.290 | |
rds | 7.884 | 0.036 | 7.935 | |
readCounts | 7.757 | 0.030 | 7.796 | |
subset-methods | 10.081 | 0.093 | 10.611 | |