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INSTALL report for infercnv on tokay2

This page was generated on 2020-10-17 11:56:52 -0400 (Sat, 17 Oct 2020).

TO THE DEVELOPERS/MAINTAINERS OF THE infercnv PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 876/1905HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
infercnv 1.4.0
Christophe Georgescu
Snapshot Date: 2020-10-16 14:40:19 -0400 (Fri, 16 Oct 2020)
URL: https://git.bioconductor.org/packages/infercnv
Branch: RELEASE_3_11
Last Commit: c422114
Last Changed Date: 2020-04-27 15:26:59 -0400 (Mon, 27 Apr 2020)
malbec2 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
machv2 macOS 10.14.6 Mojave / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: infercnv
Version: 1.4.0
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/infercnv_1.4.0.tar.gz && rm -rf infercnv.buildbin-libdir && mkdir infercnv.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=infercnv.buildbin-libdir infercnv_1.4.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL infercnv_1.4.0.zip && rm infercnv_1.4.0.tar.gz infercnv_1.4.0.zip
StartedAt: 2020-10-16 17:57:27 -0400 (Fri, 16 Oct 2020)
EndedAt: 2020-10-16 17:59:45 -0400 (Fri, 16 Oct 2020)
EllapsedTime: 138.3 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/infercnv_1.4.0.tar.gz && rm -rf infercnv.buildbin-libdir && mkdir infercnv.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=infercnv.buildbin-libdir infercnv_1.4.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL infercnv_1.4.0.zip && rm infercnv_1.4.0.tar.gz infercnv_1.4.0.zip
###
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100 3762k  100 3762k    0     0  19.4M      0 --:--:-- --:--:-- --:--:-- 20.0M

install for i386

* installing *source* package 'infercnv' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'infercnv'
    finding HTML links ... done
    CreateInfercnvObject                    html  
    HMM_states                              html  
    MCMC_inferCNV-class                     html  
    add_to_seurat                           html  
    annots                                  html  
    apply_median_filtering                  html  
    color.palette                           html  
    data                                    html  
    filterHighPNormals                      html  
    genes                                   html  
    inferCNVBayesNet                        html  
    infercnv-class                          html  
    infercnv-package                        html  
    infercnv_obj                            html  
    mcmc_obj                                html  
    plot_cnv                                html  
    plot_per_group                          html  
    run                                     html  
    sample_object                           html  
    validate_infercnv_obj                   html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'infercnv' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'infercnv' as infercnv_1.4.0.zip
* DONE (infercnv)
* installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library'
package 'infercnv' successfully unpacked and MD5 sums checked