Back to Multiple platform build/check report for BioC 3.11 |
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This page was generated on 2020-10-17 11:56:11 -0400 (Sat, 17 Oct 2020).
TO THE DEVELOPERS/MAINTAINERS OF THE BUScorrect PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 215/1905 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
BUScorrect 1.6.0 Xiangyu Luo
| malbec2 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | OK | OK | |||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK |
Package: BUScorrect |
Version: 1.6.0 |
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/BUScorrect_1.6.0.tar.gz && rm -rf BUScorrect.buildbin-libdir && mkdir BUScorrect.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=BUScorrect.buildbin-libdir BUScorrect_1.6.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL BUScorrect_1.6.0.zip && rm BUScorrect_1.6.0.tar.gz BUScorrect_1.6.0.zip |
StartedAt: 2020-10-16 17:56:22 -0400 (Fri, 16 Oct 2020) |
EndedAt: 2020-10-16 17:57:12 -0400 (Fri, 16 Oct 2020) |
EllapsedTime: 50.1 seconds |
RetCode: 0 |
Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.11/bioc/src/contrib/BUScorrect_1.6.0.tar.gz && rm -rf BUScorrect.buildbin-libdir && mkdir BUScorrect.buildbin-libdir && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=BUScorrect.buildbin-libdir BUScorrect_1.6.0.tar.gz && C:\Users\biocbuild\bbs-3.11-bioc\R\bin\R.exe CMD INSTALL BUScorrect_1.6.0.zip && rm BUScorrect_1.6.0.tar.gz BUScorrect_1.6.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 3249k 100 3249k 0 0 29.3M 0 --:--:-- --:--:-- --:--:-- 31.1M install for i386 * installing *source* package 'BUScorrect' ... ** using staged installation ** libs "C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c BUS_Cfunctions.c -o BUS_Cfunctions.o C:/rtools40/mingw32/bin/gcc -shared -s -static-libgcc -o BUScorrect.dll tmp.def BUS_Cfunctions.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/i386 -lR installing to C:/Users/biocbuild/bbs-3.11-bioc/meat/BUScorrect.buildbin-libdir/00LOCK-BUScorrect/00new/BUScorrect/libs/i386 ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'BUScorrect' finding HTML links ... done BIC_BUS html BUScorrect-package html BUSexample_data html BUSgibbs html IG_index html Subtypes html adjusted_values html baseline_expression_values html calculate_EPSR_gamma html calculate_EPSR_mu html calculate_EPSR_sigma_sq html estimate_IG_indicators html location_batch_effects html postprob_DE html postprob_DE_thr_fun html print.BUSfits html scale_batch_effects html subtype_effects html summary.BUSfits html visualize_data html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'BUScorrect' ... ** libs "C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.11-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c BUS_Cfunctions.c -o BUS_Cfunctions.o C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o BUScorrect.dll tmp.def BUS_Cfunctions.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.11-/R/bin/x64 -lR installing to C:/Users/biocbuild/bbs-3.11-bioc/meat/BUScorrect.buildbin-libdir/BUScorrect/libs/x64 ** testing if installed package can be loaded * MD5 sums packaged installation of 'BUScorrect' as BUScorrect_1.6.0.zip * DONE (BUScorrect) * installing to library 'C:/Users/biocbuild/bbs-3.11-bioc/R/library' package 'BUScorrect' successfully unpacked and MD5 sums checked