Vivek Kohar
| Snapshot Date: 2020-04-14 16:46:13 -0400 (Tue, 14 Apr 2020) |
| URL: https://git.bioconductor.org/packages/sRACIPE |
| Branch: RELEASE_3_10 |
| Last Commit: 9f721f8 |
| Last Changed Date: 2019-10-29 13:11:37 -0400 (Tue, 29 Oct 2019) |
| Back to Multiple platform build/check report for BioC 3.10 |
|
This page was generated on 2020-04-15 12:32:15 -0400 (Wed, 15 Apr 2020).
| Package 1655/1823 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| sRACIPE 1.2.0 Vivek Kohar
| malbec1 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | OK | OK | | ||||||
| merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: sRACIPE |
| Version: 1.2.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/sRACIPE_1.2.0.tar.gz && rm -rf sRACIPE.buildbin-libdir && mkdir sRACIPE.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=sRACIPE.buildbin-libdir sRACIPE_1.2.0.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL sRACIPE_1.2.0.zip && rm sRACIPE_1.2.0.tar.gz sRACIPE_1.2.0.zip |
| StartedAt: 2020-04-14 19:36:04 -0400 (Tue, 14 Apr 2020) |
| EndedAt: 2020-04-14 19:37:45 -0400 (Tue, 14 Apr 2020) |
| EllapsedTime: 100.9 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/sRACIPE_1.2.0.tar.gz && rm -rf sRACIPE.buildbin-libdir && mkdir sRACIPE.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=sRACIPE.buildbin-libdir sRACIPE_1.2.0.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL sRACIPE_1.2.0.zip && rm sRACIPE_1.2.0.tar.gz sRACIPE_1.2.0.zip
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install for i386
* installing *source* package 'sRACIPE' ...
** using staged installation
** libs
C:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=core2 -c RcppExports.cpp -o RcppExports.o
C:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=core2 -c generateThresholds.cpp -o generateThresholds.o
C:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=core2 -c header.cpp -o header.o
C:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=core2 -c simulateGRC.cpp -o simulateGRC.o
C:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=core2 -c steppers.cpp -o steppers.o
C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o sRACIPE.dll tmp.def RcppExports.o generateThresholds.o header.o simulateGRC.o steppers.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.10-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.10-bioc/meat/sRACIPE.buildbin-libdir/00LOCK-sRACIPE/00new/sRACIPE/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'sRACIPE'
finding HTML links ... done
CoupledToggleSwitchSA html
EMT1 html
EMT2 html
RacipeSE-class html
finding level-2 HTML links ... done
RacipeSE html
annotation-RacipeSE-method html
annotation-set-RacipeSE-ANY-method html
configData html
demoCircuit html
densityPlot html
dot-ModelPvalue html
dot-NthMin html
dot-PermutedVar html
dot-SimulatedPValueAbs html
dot-SimulatedVarPValue html
dot-loadNetworkFile html
sRACIPE html
sracipeCircuit-set html
sracipeCircuit html
sracipeConfig-set html
sracipeConfig html
sracipeGenParamNames html
sracipeGeneEx html
sracipeGetTS html
sracipeHeatmapSimilarity html
sracipeIC-set html
sracipeIC html
sracipeKnockDown html
sracipeNormalize html
sracipeOverExp html
sracipeParams-set html
sracipeParams html
sracipePlotCircuit html
sracipePlotData html
sracipePlotParamBifur html
sracipeSimulate html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'sRACIPE' ...
** libs
C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=core2 -c RcppExports.cpp -o RcppExports.o
C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=core2 -c generateThresholds.cpp -o generateThresholds.o
C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=core2 -c header.cpp -o header.o
C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=core2 -c simulateGRC.cpp -o simulateGRC.o
C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=core2 -c steppers.cpp -o steppers.o
C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o sRACIPE.dll tmp.def RcppExports.o generateThresholds.o header.o simulateGRC.o steppers.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.10-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.10-bioc/meat/sRACIPE.buildbin-libdir/sRACIPE/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'sRACIPE' as sRACIPE_1.2.0.zip
* DONE (sRACIPE)
* installing to library 'C:/Users/biocbuild/bbs-3.10-bioc/R/library'
package 'sRACIPE' successfully unpacked and MD5 sums checked