Back to Multiple platform build/check report for BioC 3.10 |
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This page was generated on 2020-04-15 12:41:00 -0400 (Wed, 15 Apr 2020).
Package 840/1823 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
IMPCdata 1.22.0 Jeremy Mason
| malbec1 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | |||||||
tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||
merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | [ OK ] | OK |
Package: IMPCdata |
Version: 1.22.0 |
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:IMPCdata.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings IMPCdata_1.22.0.tar.gz |
StartedAt: 2020-04-15 03:09:56 -0400 (Wed, 15 Apr 2020) |
EndedAt: 2020-04-15 03:11:25 -0400 (Wed, 15 Apr 2020) |
EllapsedTime: 89.1 seconds |
RetCode: 0 |
Status: OK |
CheckDir: IMPCdata.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:IMPCdata.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings IMPCdata_1.22.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.10-bioc/meat/IMPCdata.Rcheck’ * using R version 3.6.3 (2020-02-29) * using platform: x86_64-apple-darwin15.6.0 (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘IMPCdata/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘IMPCdata’ version ‘1.22.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘IMPCdata’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking sizes of PDF files under ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU or elapsed time > 5s user system elapsed getPhenCenters 0.328 0.018 13.559 printPhenCenters 0.044 0.004 5.266 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
IMPCdata.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL IMPCdata ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/3.6/Resources/library’ * installing *source* package ‘IMPCdata’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (IMPCdata)
IMPCdata.Rcheck/IMPCdata-Ex.timings
name | user | system | elapsed | |
getAlleles | 0.255 | 0.020 | 3.974 | |
getGenes | 0.221 | 0.013 | 3.232 | |
getIMPCDataset | 1.152 | 0.045 | 4.392 | |
getIMPCTable | 0.114 | 0.010 | 2.666 | |
getName | 0.018 | 0.002 | 0.731 | |
getParameters | 0.154 | 0.007 | 3.238 | |
getPhenCenters | 0.328 | 0.018 | 13.559 | |
getPipelines | 0.126 | 0.006 | 3.174 | |
getProcedures | 0.148 | 0.008 | 4.509 | |
getStrains | 0.070 | 0.004 | 2.644 | |
getZygosities | 0.024 | 0.002 | 0.527 | |
printAlleles | 0.135 | 0.007 | 3.155 | |
printGenes | 0.138 | 0.007 | 3.162 | |
printParameters | 0.137 | 0.007 | 3.277 | |
printPhenCenters | 0.044 | 0.004 | 5.266 | |
printPipelines | 0.114 | 0.006 | 4.004 | |
printProcedures | 0.136 | 0.007 | 4.490 | |
printStrains | 0.068 | 0.004 | 2.677 | |