Xin Wang
| Snapshot Date: 2020-04-14 16:46:13 -0400 (Tue, 14 Apr 2020) |
| URL: https://git.bioconductor.org/packages/HTSanalyzeR |
| Branch: RELEASE_3_10 |
| Last Commit: eec27b7 |
| Last Changed Date: 2019-10-29 13:08:17 -0400 (Tue, 29 Oct 2019) |
| Back to Multiple platform build/check report for BioC 3.10 |
|
This page was generated on 2020-04-15 12:19:22 -0400 (Wed, 15 Apr 2020).
| Package 802/1823 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
Xin Wang
| malbec1 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | WARNINGS | OK | | ||||||
| merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | WARNINGS | OK | |
| Package: HTSanalyzeR |
| Version: 2.38.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/HTSanalyzeR_2.38.0.tar.gz && rm -rf HTSanalyzeR.buildbin-libdir && mkdir HTSanalyzeR.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=HTSanalyzeR.buildbin-libdir HTSanalyzeR_2.38.0.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL HTSanalyzeR_2.38.0.zip && rm HTSanalyzeR_2.38.0.tar.gz HTSanalyzeR_2.38.0.zip |
| StartedAt: 2020-04-14 20:39:01 -0400 (Tue, 14 Apr 2020) |
| EndedAt: 2020-04-14 20:39:51 -0400 (Tue, 14 Apr 2020) |
| EllapsedTime: 49.4 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/HTSanalyzeR_2.38.0.tar.gz && rm -rf HTSanalyzeR.buildbin-libdir && mkdir HTSanalyzeR.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=HTSanalyzeR.buildbin-libdir HTSanalyzeR_2.38.0.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL HTSanalyzeR_2.38.0.zip && rm HTSanalyzeR_2.38.0.tar.gz HTSanalyzeR_2.38.0.zip
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install for i386
* installing *source* package 'HTSanalyzeR' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
Warning: replacing previous import 'igraph::union' by 'GSEABase::union' when loading 'HTSanalyzeR'
** help
*** installing help indices
converting help for package 'HTSanalyzeR'
finding HTML links ... done
FDRcollectionGsea html
GOGeneSets html
GSCA-class html
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GenHTSAHtmlRowUnit html
HTSanalyzeR html
HTSanalyzeR4cellHTS2 html
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KeggGeneSets html
NWA-class html
aggregatePvals html
analyze html
analyzeGeneSetCollections html
annotationConvertor html
appendGSTerms html
biogridDataDownload html
celAnnotationConvertor html
cellHTS2OutputStatTests html
changes html
collectionGsea html
data-KcViab html
drosoAnnotationConvertor html
duplicateRemover html
getTopGeneSets html
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gseaPlots html
gseaScores html
htmlAttrVectorPaste html
hyperGeoTest html
interactome html
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makeGSEAplots html
makeOverlapTable html
mammalAnnotationConvertor html
multiHyperGeoTest html
networkAnalysis html
networkPlot html
pairwiseGsea html
pairwiseGseaPlot html
pairwisePhenoMannWhit html
paraCheck html
permutationPvalueCollectionGsea html
plotEnrichMap html
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plotGSEA html
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Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmpei9JmD/R.INSTALL27f05b70ae/HTSanalyzeR/man/plotGSEA.Rd:25: file link 'GSCA' in package 'HTSanalyzeR' does not exist and so has been treated as a topic
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plotSubNet html
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preprocess html
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report html
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reportAll html
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summarize html
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viewEnrichMap html
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Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmpei9JmD/R.INSTALL27f05b70ae/HTSanalyzeR/man/viewEnrichMap.Rd:25: file link 'GSCA' in package 'HTSanalyzeR' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmpei9JmD/R.INSTALL27f05b70ae/HTSanalyzeR/man/viewEnrichMap.Rd:29: file link 'GSCA' in package 'HTSanalyzeR' does not exist and so has been treated as a topic
viewGSEA html
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmpei9JmD/R.INSTALL27f05b70ae/HTSanalyzeR/man/viewGSEA.Rd:10: file link 'GSCA' in package 'HTSanalyzeR' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmpei9JmD/R.INSTALL27f05b70ae/HTSanalyzeR/man/viewGSEA.Rd:14: file link 'GSCA' in package 'HTSanalyzeR' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmpei9JmD/R.INSTALL27f05b70ae/HTSanalyzeR/man/viewGSEA.Rd:24: file link 'GSCA' in package 'HTSanalyzeR' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmpei9JmD/R.INSTALL27f05b70ae/HTSanalyzeR/man/viewGSEA.Rd:27: file link 'GSCA' in package 'HTSanalyzeR' does not exist and so has been treated as a topic
viewSubNet html
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmpei9JmD/R.INSTALL27f05b70ae/HTSanalyzeR/man/viewSubNet.Rd:10: file link 'NWA' in package 'HTSanalyzeR' does not exist and so has been treated as a topic
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writeHTSAHtmlHead html
writeHTSAHtmlSummary html
writeHTSAHtmlTab html
writeHTSAHtmlTable html
writeHTSAHtmlTail html
writeReportHTSA html
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmpei9JmD/R.INSTALL27f05b70ae/HTSanalyzeR/man/writeReportHTSA.Rd:8: file link 'GSCA' in package 'HTSanalyzeR' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmpei9JmD/R.INSTALL27f05b70ae/HTSanalyzeR/man/writeReportHTSA.Rd:8: file link 'NWA' in package 'HTSanalyzeR' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmpei9JmD/R.INSTALL27f05b70ae/HTSanalyzeR/man/writeReportHTSA.Rd:17: file link 'GSCA' in package 'HTSanalyzeR' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmpei9JmD/R.INSTALL27f05b70ae/HTSanalyzeR/man/writeReportHTSA.Rd:20: file link 'NWA' in package 'HTSanalyzeR' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmpei9JmD/R.INSTALL27f05b70ae/HTSanalyzeR/man/writeReportHTSA.Rd:56: file link 'GSCA' in package 'HTSanalyzeR' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/Rtmpei9JmD/R.INSTALL27f05b70ae/HTSanalyzeR/man/writeReportHTSA.Rd:57: file link 'NWA' in package 'HTSanalyzeR' does not exist and so has been treated as a topic
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning: replacing previous import 'igraph::union' by 'GSEABase::union' when loading 'HTSanalyzeR'
Warning: Package 'HTSanalyzeR' is deprecated and will be removed from
Bioconductor version 3.11
** testing if installed package can be loaded from final location
Warning: replacing previous import 'igraph::union' by 'GSEABase::union' when loading 'HTSanalyzeR'
Warning: Package 'HTSanalyzeR' is deprecated and will be removed from
Bioconductor version 3.11
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'HTSanalyzeR' ...
** testing if installed package can be loaded
Warning: replacing previous import 'igraph::union' by 'GSEABase::union' when loading 'HTSanalyzeR'
Warning: Package 'HTSanalyzeR' is deprecated and will be removed from
Bioconductor version 3.11
* MD5 sums
packaged installation of 'HTSanalyzeR' as HTSanalyzeR_2.38.0.zip
* DONE (HTSanalyzeR)
* installing to library 'C:/Users/biocbuild/bbs-3.10-bioc/R/library'
package 'HTSanalyzeR' successfully unpacked and MD5 sums checked