Back to Multiple platform build/check report for BioC 3.10 |
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This page was generated on 2020-04-15 12:08:24 -0400 (Wed, 15 Apr 2020).
Package 470/1823 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
DMRcate 2.0.7 Tim Peters
| malbec1 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | [ OK ] | |||||||
tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | ERROR | OK | |||||||
merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK |
Package: DMRcate |
Version: 2.0.7 |
Command: /home/biocbuild/bbs-3.10-bioc/R/bin/R CMD check --install=check:DMRcate.install-out.txt --library=/home/biocbuild/bbs-3.10-bioc/R/library --no-vignettes --timings DMRcate_2.0.7.tar.gz |
StartedAt: 2020-04-15 02:03:46 -0400 (Wed, 15 Apr 2020) |
EndedAt: 2020-04-15 02:32:05 -0400 (Wed, 15 Apr 2020) |
EllapsedTime: 1699.7 seconds |
RetCode: 0 |
Status: OK |
CheckDir: DMRcate.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.10-bioc/R/bin/R CMD check --install=check:DMRcate.install-out.txt --library=/home/biocbuild/bbs-3.10-bioc/R/library --no-vignettes --timings DMRcate_2.0.7.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.10-bioc/meat/DMRcate.Rcheck’ * using R version 3.6.3 (2020-02-29) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘DMRcate/DESCRIPTION’ ... OK * this is package ‘DMRcate’ version ‘2.0.7’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘DMRcate’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU or elapsed time > 5s user system elapsed DMR.plot 243.368 4.316 268.909 DMRcate-package 207.020 3.112 213.396 extractRanges 170.800 0.804 176.323 dmrcate 168.136 1.024 170.578 rmSNPandCH 163.180 0.444 165.277 cpg.annotate 159.008 3.088 163.910 sequencing.annotate 67.348 4.636 74.383 changeFDR 67.300 4.604 76.782 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
DMRcate.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.10-bioc/R/bin/R CMD INSTALL DMRcate ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.10-bioc/R/library’ * installing *source* package ‘DMRcate’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading Warning: replacing previous import 'minfi::getMeth' by 'bsseq::getMeth' when loading 'DMRcate' ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location Warning: replacing previous import 'minfi::getMeth' by 'bsseq::getMeth' when loading 'DMRcate' ** testing if installed package can be loaded from final location Warning: replacing previous import 'minfi::getMeth' by 'bsseq::getMeth' when loading 'DMRcate' ** testing if installed package keeps a record of temporary installation path * DONE (DMRcate)
DMRcate.Rcheck/DMRcate-Ex.timings
name | user | system | elapsed | |
DMR.plot | 243.368 | 4.316 | 268.909 | |
DMRcate-package | 207.020 | 3.112 | 213.396 | |
changeFDR | 67.300 | 4.604 | 76.782 | |
cpg.annotate | 159.008 | 3.088 | 163.910 | |
dmrcate | 168.136 | 1.024 | 170.578 | |
extractRanges | 170.800 | 0.804 | 176.323 | |
rmSNPandCH | 163.180 | 0.444 | 165.277 | |
sequencing.annotate | 67.348 | 4.636 | 74.383 | |