Steffen Neumann
| Snapshot Date: 2020-04-14 16:46:13 -0400 (Tue, 14 Apr 2020) |
| URL: https://git.bioconductor.org/packages/CAMERA |
| Branch: RELEASE_3_10 |
| Last Commit: c99e379 |
| Last Changed Date: 2019-10-29 13:08:04 -0400 (Tue, 29 Oct 2019) |
| Back to Multiple platform build/check report for BioC 3.10 |
|
This page was generated on 2020-04-15 12:18:45 -0400 (Wed, 15 Apr 2020).
| Package 217/1823 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| CAMERA 1.42.0 Steffen Neumann
| malbec1 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | WARNINGS | OK | | ||||||
| merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | WARNINGS | OK | |
| Package: CAMERA |
| Version: 1.42.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/CAMERA_1.42.0.tar.gz && rm -rf CAMERA.buildbin-libdir && mkdir CAMERA.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=CAMERA.buildbin-libdir CAMERA_1.42.0.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL CAMERA_1.42.0.zip && rm CAMERA_1.42.0.tar.gz CAMERA_1.42.0.zip |
| StartedAt: 2020-04-14 19:49:48 -0400 (Tue, 14 Apr 2020) |
| EndedAt: 2020-04-14 19:52:01 -0400 (Tue, 14 Apr 2020) |
| EllapsedTime: 133.3 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/CAMERA_1.42.0.tar.gz && rm -rf CAMERA.buildbin-libdir && mkdir CAMERA.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=CAMERA.buildbin-libdir CAMERA_1.42.0.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL CAMERA_1.42.0.zip && rm CAMERA_1.42.0.tar.gz CAMERA_1.42.0.zip
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install for i386
* installing *source* package 'CAMERA' ...
** using staged installation
** libs
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=core2 -c fastMatch.c -o fastMatch.o
C:/Rtools/mingw_32/bin/gcc -shared -s -static-libgcc -o CAMERA.dll tmp.def fastMatch.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.10-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.10-bioc/meat/CAMERA.buildbin-libdir/00LOCK-CAMERA/00new/CAMERA/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
Warning: replacing previous import 'xcms::plot' by 'graphics::plot' when loading 'CAMERA'
** help
*** installing help indices
converting help for package 'CAMERA'
finding HTML links ... done
annotate-methods html
annotateDiffreport html
finding level-2 HTML links ... done
calcCaS-methods html
calcCiS-methods html
calcIsotopes-methods html
calcPC-methods html
calcPC.hcs-methods html
calcPC.lpc-methods html
cleanParallel html
combinexsAnnos html
compoundLibraries html
compoundQuantiles-class html
compoundQuantiles html
findAdducts-methods html
findIsotopes-methods html
findIsotopesWithValidation-methods html
findKendrickMasses html
findNeutralLoss html
findNeutralLossSpecs html
getAllPeakEICs-methods html
getAtomCount-compoundQuantiles-method html
getIsotopeCluster html
getIsotopeProportion-compoundQuantiles-method
html
getPeaklist-methods html
getReducedPeaklist-methods html
getpspectra html
groupCorr-methods html
groupDen-methods html
groupFWHM-methods html
massWindowSizes html
mm14 html
plotEIC.xsAnnotate html
plotPsSpectrum.xsAnnotate html
psDist-methods html
pspec2metfrag html
ruleSet-class html
xsAnnotate-class html
xsAnnotate html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning: replacing previous import 'xcms::plot' by 'graphics::plot' when loading 'CAMERA'
** testing if installed package can be loaded from final location
Warning: replacing previous import 'xcms::plot' by 'graphics::plot' when loading 'CAMERA'
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'CAMERA' ...
** libs
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=core2 -c fastMatch.c -o fastMatch.o
C:/Rtools/mingw_64/bin/gcc -shared -s -static-libgcc -o CAMERA.dll tmp.def fastMatch.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.10-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.10-bioc/meat/CAMERA.buildbin-libdir/CAMERA/libs/x64
** testing if installed package can be loaded
Warning: replacing previous import 'xcms::plot' by 'graphics::plot' when loading 'CAMERA'
* MD5 sums
packaged installation of 'CAMERA' as CAMERA_1.42.0.zip
* DONE (CAMERA)
* installing to library 'C:/Users/biocbuild/bbs-3.10-bioc/R/library'
package 'CAMERA' successfully unpacked and MD5 sums checked