Estefania Mancini
| Snapshot Date: 2020-04-14 16:46:13 -0400 (Tue, 14 Apr 2020) |
| URL: https://git.bioconductor.org/packages/ASpli |
| Branch: RELEASE_3_10 |
| Last Commit: 23929ac |
| Last Changed Date: 2019-10-29 13:09:57 -0400 (Tue, 29 Oct 2019) |
| Back to Multiple platform build/check report for BioC 3.10 |
|
This page was generated on 2020-04-15 12:27:03 -0400 (Wed, 15 Apr 2020).
| Package 91/1823 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| ASpli 1.12.0 Estefania Mancini
| malbec1 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | [ OK ] | OK | | ||||||
| merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: ASpli |
| Version: 1.12.0 |
| Command: C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:ASpli.install-out.txt --library=C:\Users\biocbuild\bbs-3.10-bioc\R\library --no-vignettes --timings ASpli_1.12.0.tar.gz |
| StartedAt: 2020-04-15 01:21:43 -0400 (Wed, 15 Apr 2020) |
| EndedAt: 2020-04-15 01:31:24 -0400 (Wed, 15 Apr 2020) |
| EllapsedTime: 581.6 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: ASpli.Rcheck |
| Warnings: 0 |
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### Running command:
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### C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:ASpli.install-out.txt --library=C:\Users\biocbuild\bbs-3.10-bioc\R\library --no-vignettes --timings ASpli_1.12.0.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.10-bioc/meat/ASpli.Rcheck'
* using R version 3.6.3 (2020-02-29)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'ASpli/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'ASpli' version '1.12.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'ASpli' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
plotGenomicRegions 12.87 0.11 13.17
plotBins 8.63 0.31 8.94
mergeBinDUAS-method 7.46 0.05 7.52
ASpli-package 6.39 1.03 7.58
subset-methods 5.16 0.01 5.17
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
plotGenomicRegions 20.01 0.11 20.13
ASpli-package 10.69 0.04 10.75
mergeBinDUAS-method 10.55 0.16 10.70
plotBins 10.09 0.06 10.16
AsDiscover-methods 8.78 0.02 8.80
junctionDUreport 8.75 0.01 8.77
subset-methods 6.99 0.03 7.02
DUreportBinSplice-method 6.75 0.00 6.75
readCounts 6.59 0.02 6.62
rds 5.97 0.00 5.97
containsJunctions-function 5.83 0.02 5.85
DUreport 5.54 0.00 5.53
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
ASpli.Rcheck/00install.out
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###
### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/ASpli_1.12.0.tar.gz && rm -rf ASpli.buildbin-libdir && mkdir ASpli.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ASpli.buildbin-libdir ASpli_1.12.0.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL ASpli_1.12.0.zip && rm ASpli_1.12.0.tar.gz ASpli_1.12.0.zip
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 2227k 100 2227k 0 0 7325k 0 --:--:-- --:--:-- --:--:-- 7425k
install for i386
* installing *source* package 'ASpli' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'ASpli'
finding HTML links ... done
ASpli-package html
ASpliAS-class html
ASpliCounts-class html
ASpliCounts html
ASpliDU-class html
ASpliFeatures-class html
AsDiscover-methods html
DUreport html
finding level-2 HTML links ... done
DUreportBinSplice-method html
acc_AS html
acc_DU html
acc_counts html
acc_features html
binGenome-methods html
binGenome html
containsJunctions-function html
example_data html
filterDU-method html
getConditions-function html
junctionDUreport html
loadBAM html
mergeBinDUAS-method html
plotBins html
plotGenomicRegions html
rds html
readCounts html
show-methods html
subset-methods html
write-methods html
write html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'ASpli' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'ASpli' as ASpli_1.12.0.zip
* DONE (ASpli)
* installing to library 'C:/Users/biocbuild/bbs-3.10-bioc/R/library'
package 'ASpli' successfully unpacked and MD5 sums checked
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ASpli.Rcheck/examples_i386/ASpli-Ex.timings
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ASpli.Rcheck/examples_x64/ASpli-Ex.timings
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