BioC experimental data: CHECK report for cnvGSAdata on zin2

Package: cnvGSAdata

Version: 1.4.0

Command: /home/biocbuild/bbs-3.1-bioc/R/bin/R CMD check --no-vignettes --timings cnvGSAdata_1.4.0.tar.gz

StartedAt: 2015-10-07 09:22:06 -0700 (Wed, 07 Oct 2015)

EndedAt: 2015-10-07 09:24:28 -0700 (Wed, 07 Oct 2015)

EllapsedTime: 141.8 seconds

RetCode: 0

Status:  WARNINGS

CheckDir: cnvGSAdata.Rcheck

Warnings: 1

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### Running command:
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###   /home/biocbuild/bbs-3.1-bioc/R/bin/R CMD check --no-vignettes --timings cnvGSAdata_1.4.0.tar.gz
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* using log directory ‘/home/biocbuild/bbs-3.1-data-experiment/meat/cnvGSAdata.Rcheck’
* using R version 3.2.2 (2015-08-14)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘cnvGSAdata/DESCRIPTION’ ... OK
* this is package ‘cnvGSAdata’ version ‘1.4.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘cnvGSAdata’ can be installed ... [3s/10s] OK
* checking installed package size ... NOTE
  installed size is  9.1Mb
  sub-directories of 1Mb or more:
    data      5.2Mb
    extdata   3.8Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... WARNING
  
  Note: significantly better compression could be obtained
        by using R CMD build --resave-data
                              old_size new_size compress
  cnvGSA_input_example.RData     2.4Mb    1.2Mb       xz
  cnvGSA_output_example.RData    2.5Mb    768Kb       xz
  gs_data_example.RData          310Kb    207Kb       xz
* checking examples ... [6s/13s] OK
Examples with CPU or elapsed time > 5s
                     user system elapsed
enrGMT_AGP_demo.gmt 3.074   0.05   6.761
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING, 1 NOTE
See
  ‘/home/biocbuild/bbs-3.1-data-experiment/meat/cnvGSAdata.Rcheck/00check.log’
for details.

* installing *source* package ‘cnvGSAdata’ ...
** data
** inst
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
Creating a generic function for ‘nchar’ from package ‘base’ in package ‘S4Vectors’
* DONE (cnvGSAdata)

name	user	system	elapsed
cnv_AGP_demo.txt	0.039	0.000	0.041
enrGMT_AGP_demo.gmt	3.074	0.050	6.761
enrGeneric_AGP_demo.txt	0.002	0.000	0.002
gene_ID_demo.txt	0.177	0.000	0.365
kl_gene_AGP_demo.txt	0.002	0.000	0.002
kl_loci_AGP_demo.txt	0.002	0.000	0.007
ph_AGP_demo.txt	0.018	0.000	0.067