BioC experimental data: CHECK report for pRolocdata on petty

Package: pRolocdata

Version: 1.6.0

Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings pRolocdata_1.6.0.tar.gz

StartedAt: 2015-10-07 09:42:56 -0700 (Wed, 07 Oct 2015)

EndedAt: 2015-10-07 09:45:42 -0700 (Wed, 07 Oct 2015)

EllapsedTime: 165.5 seconds

RetCode: 0

Status:  OK

CheckDir: pRolocdata.Rcheck

Warnings: 0

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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings pRolocdata_1.6.0.tar.gz
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* using log directory ‘/Users/biocbuild/bbs-3.1-data-experiment/meat/pRolocdata.Rcheck’
* using R version 3.2.2 Patched (2015-08-14 r69078)
* using platform: x86_64-apple-darwin10.8.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘pRolocdata/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘pRolocdata’ version ‘1.6.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘pRolocdata’ can be installed ... [13s/14s] OK
* checking installed package size ... NOTE
  installed size is 20.4Mb
  sub-directories of 1Mb or more:
    data      6.3Mb
    extdata  13.9Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... [25s/26s] OK
Examples with CPU or elapsed time > 5s
           user system elapsed
fabre2015 6.630  0.222   7.832
groen2014 5.998  0.109   6.107
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  ‘/Users/biocbuild/bbs-3.1-data-experiment/meat/pRolocdata.Rcheck/00check.log’
for details.

* installing *source* package ‘pRolocdata’ ...
** R
** data
** inst
** preparing package for lazy loading
Creating a generic function for ‘nchar’ from package ‘base’ in package ‘S4Vectors’
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
Creating a generic function for ‘nchar’ from package ‘base’ in package ‘S4Vectors’
* DONE (pRolocdata)

name	user	system	elapsed
E14TG2a	0.043	0.011	0.054
andy2011	0.087	0.029	0.117
at_chloro	0.172	0.013	0.185
dunkley2006	0.020	0.014	0.033
fabre2015	6.630	0.222	7.832
foster2006	0.049	0.015	0.063
groen2014	5.998	0.109	6.107
hall2009	0.627	0.028	0.656
havugimana2012	0.619	0.021	0.639
kirkwood2013	0.059	0.004	0.244
kristensen2012	0.033	0.002	0.035
nikolovski2012	1.256	0.050	1.329
nikolovski2014	0.780	0.013	0.795
pRolocdata	0.011	0.008	0.052
pRolocmetadata	0.028	0.005	0.034
tan2009	0.027	0.003	0.030
trotter2010	0.747	0.024	0.795