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BioC experimental data: CHECK report for miRNATarget on moscato2

This page was generated on 2015-10-07 16:21:17 -0700 (Wed, 07 Oct 2015).

Package 157/241HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
miRNATarget 1.6.0
Y-h. Taguchi
Snapshot Date: 2015-10-07 07:15:35 -0700 (Wed, 07 Oct 2015)
URL: https://hedgehog.fhcrc.org/bioc-data/branches/RELEASE_3_1/experiment/pkgs/miRNATarget
Last Changed Rev: 3279 / Revision: 3442
Last Changed Date: 2015-04-16 13:16:53 -0700 (Thu, 16 Apr 2015)
zin2 Linux (Ubuntu 14.04.2 LTS) / x86_64  NotNeeded  OK  OK UNNEEDED, same version exists in internal repository
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  NotNeeded  OK [ OK ] OK 
petty Mac OS X Snow Leopard (10.6.8) / x86_64  NotNeeded  OK  OK  OK 

Summary

Package: miRNATarget
Version: 1.6.0
Command: rm -rf miRNATarget.buildbin-libdir miRNATarget.Rcheck && mkdir miRNATarget.buildbin-libdir miRNATarget.Rcheck && E:\biocbld\bbs-3.1-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=miRNATarget.buildbin-libdir miRNATarget_1.6.0.tar.gz >miRNATarget.Rcheck\00install.out 2>&1 && cp miRNATarget.Rcheck\00install.out miRNATarget-install.out && E:\biocbld\bbs-3.1-bioc\R\bin\R.exe CMD check --library=miRNATarget.buildbin-libdir --install="check:miRNATarget-install.out" --force-multiarch --no-vignettes --timings miRNATarget_1.6.0.tar.gz
StartedAt: 2015-10-07 11:21:08 -0700 (Wed, 07 Oct 2015)
EndedAt: 2015-10-07 11:23:55 -0700 (Wed, 07 Oct 2015)
EllapsedTime: 166.4 seconds
RetCode: 0
Status:  OK  
CheckDir: miRNATarget.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf miRNATarget.buildbin-libdir miRNATarget.Rcheck && mkdir miRNATarget.buildbin-libdir miRNATarget.Rcheck && E:\biocbld\bbs-3.1-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=miRNATarget.buildbin-libdir miRNATarget_1.6.0.tar.gz >miRNATarget.Rcheck\00install.out 2>&1 && cp miRNATarget.Rcheck\00install.out miRNATarget-install.out  && E:\biocbld\bbs-3.1-bioc\R\bin\R.exe CMD check --library=miRNATarget.buildbin-libdir --install="check:miRNATarget-install.out" --force-multiarch --no-vignettes --timings miRNATarget_1.6.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'E:/biocbld/bbs-3.1-data-experiment/meat/miRNATarget.Rcheck'
* using R version 3.2.2 (2015-08-14)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'miRNATarget/DESCRIPTION' ... OK
* this is package 'miRNATarget' version '1.6.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... NOTE
Found the following hidden files and directories:
  vignettes/.goutputstream-8N717W
These were most likely included in error. See section 'Package
structure' in the 'Writing R Extensions' manual.
* checking for portable file names ... OK
* checking whether package 'miRNATarget' can be installed ... OK
* checking installed package size ... NOTE
  installed size is 59.7Mb
  sub-directories of 1Mb or more:
    data  59.3Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... [15s] OK
** running examples for arch 'x64' ... [16s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 3 NOTEs
See
  'E:/biocbld/bbs-3.1-data-experiment/meat/miRNATarget.Rcheck/00check.log'
for details.


miRNATarget.Rcheck/00install.out:


install for i386

* installing *source* package 'miRNATarget' ...
** data
** inst
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'miRNATarget' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'miRNATarget' as miRNATarget_1.6.0.zip
* DONE (miRNATarget)

miRNATarget.Rcheck/examples_i386/miRNATarget-Ex.timings:

nameusersystemelapsed
HS_conv_id0.020.000.02
HS_refseq_to_affy_hc_g1100.010.000.01
HS_refseq_to_affy_hg_focus0.030.000.04
HS_refseq_to_affy_hg_u133_plus_20.080.000.07
HS_refseq_to_affy_hg_u133a0.050.000.05
HS_refseq_to_affy_hg_u133a_20.050.000.05
HS_refseq_to_affy_hg_u133b0.030.000.03
HS_refseq_to_affy_hg_u95a0.030.000.03
HS_refseq_to_affy_hg_u95av20.030.000.03
HS_refseq_to_affy_hg_u95b0.020.000.02
HS_refseq_to_affy_hg_u95c0.010.000.01
HS_refseq_to_affy_hg_u95d0.000.020.02
HS_refseq_to_affy_hg_u95e0.020.000.01
HS_refseq_to_affy_huex_1_0_st_v21.230.011.25
HS_refseq_to_affy_hugene_1_0_st_v10.060.020.08
HS_refseq_to_affy_hugenefl0.020.000.01
HS_refseq_to_affy_u133_x3p0.090.000.10
HS_refseq_to_agilent_cgh_44b0.020.000.01
HS_refseq_to_agilent_wholegenome0.070.010.10
HS_refseq_to_canonical_transcript_stable_id0.100.000.09
HS_refseq_to_ccds0.030.020.05
HS_refseq_to_codelink0.060.000.06
HS_refseq_to_efg_agilent_sureprint_g3_ge_8x60k000
HS_refseq_to_efg_agilent_wholegenome_4x44k_v1000
HS_refseq_to_efg_agilent_wholegenome_4x44k_v2000
HS_refseq_to_embl0.960.000.96
HS_refseq_to_ensembl_exon_id000
HS_refseq_to_ensembl_gene_id0.070.000.07
HS_refseq_to_ensembl_peptide_id0.040.000.04
HS_refseq_to_ensembl_transcript_id0.070.000.06
HS_refseq_to_entrezgene0.060.000.07
HS_refseq_to_hgnc_id0.060.000.06
HS_refseq_to_hgnc_symbol0.110.000.11
HS_refseq_to_hgnc_transcript_name0.060.000.06
HS_refseq_to_illumina_humanht_120.060.000.06
HS_refseq_to_illumina_humanwg_6_v10.070.000.07
HS_refseq_to_illumina_humanwg_6_v20.040.000.04
HS_refseq_to_illumina_humanwg_6_v30.070.000.07
HS_refseq_to_interpro0.390.000.39
HS_refseq_to_ipi0.20.00.2
HS_refseq_to_merops000
HS_refseq_to_pdb0.110.000.11
HS_refseq_to_pfam0.10.00.1
HS_refseq_to_phalanx_onearray0.060.000.06
HS_refseq_to_protein_id0.90.00.9
HS_refseq_to_refseq_dna0.180.000.18
HS_refseq_to_refseq_genomic000
HS_refseq_to_refseq_peptide0.120.000.12
HS_refseq_to_rfam0.020.000.02
HS_refseq_to_rfam_gene_name000
HS_refseq_to_rfam_transcript_name000
HS_refseq_to_smart0.030.020.04
HS_refseq_to_tigrfam0.000.010.02
HS_refseq_to_ucsc0.060.000.06
HS_refseq_to_unigene0.080.000.08
HS_refseq_to_uniprot_genename0.060.000.06
HS_refseq_to_uniprot_genename_transcript_name000
HS_refseq_to_uniprot_sptrembl000
HS_refseq_to_uniprot_swissprot000
HS_refseq_to_uniprot_swissprot_accession000
HS_refseq_to_wikigene_id0.000.010.01
HS_refseq_to_wikigene_name0.060.000.06
MM_conv_id000
MM_refseq_to_affy_mg_u74a0.030.000.04
MM_refseq_to_affy_mg_u74av20.020.000.01
MM_refseq_to_affy_mg_u74b0.020.000.02
MM_refseq_to_affy_mg_u74bv20.010.000.01
MM_refseq_to_affy_mg_u74c0.020.000.02
MM_refseq_to_affy_mg_u74cv20.010.000.01
MM_refseq_to_affy_moe430a0.030.000.03
MM_refseq_to_affy_moe430b0.020.020.04
MM_refseq_to_affy_moex_1_0_st_v10.720.000.71
MM_refseq_to_affy_mogene_1_0_st_v10.040.000.05
MM_refseq_to_affy_mouse430_20.070.000.06
MM_refseq_to_affy_mouse430a_20.030.000.03
MM_refseq_to_affy_mu11ksuba0.000.010.02
MM_refseq_to_affy_mu11ksubb0.010.000.02
MM_refseq_to_agilent_wholegenome0.080.000.07
MM_refseq_to_canonical_transcript_stable_id0.080.000.08
MM_refseq_to_ccds0.030.000.03
MM_refseq_to_codelink0.050.000.05
MM_refseq_to_efg_agilent_sureprint_g3_ge_8x60k000
MM_refseq_to_efg_agilent_wholegenome_4x44k_v1000
MM_refseq_to_efg_agilent_wholegenome_4x44k_v20.010.000.01
MM_refseq_to_embl0.420.000.43
MM_refseq_to_ensembl_exon_id000
MM_refseq_to_ensembl_gene_id0.030.020.04
MM_refseq_to_ensembl_peptide_id0.030.000.03
MM_refseq_to_ensembl_transcript_id0.050.000.05
MM_refseq_to_entrezgene0.030.000.03
MM_refseq_to_fantom0.210.010.22
MM_refseq_to_illumina_mousewg_6_v10.040.020.06
MM_refseq_to_illumina_mousewg_6_v20.080.000.08
MM_refseq_to_interpro0.130.000.13
MM_refseq_to_ipi0.000.020.01
MM_refseq_to_merops000
MM_refseq_to_mgi_id0.040.000.05
MM_refseq_to_mgi_symbol0.190.000.19
MM_refseq_to_mgi_transcript_name0.050.000.04
MM_refseq_to_pdb0.010.000.02
MM_refseq_to_pfam0.070.000.06
MM_refseq_to_phalanx_onearray0.040.000.05
MM_refseq_to_protein_id0.310.000.31
MM_refseq_to_refseq_dna0.050.000.05
MM_refseq_to_refseq_peptide0.080.000.08
MM_refseq_to_rfam000
MM_refseq_to_rfam_gene_name0.000.010.02
MM_refseq_to_rfam_transcript_name000
MM_refseq_to_smart0.030.000.03
MM_refseq_to_tigrfam0.000.020.01
MM_refseq_to_ucsc0.040.000.05
MM_refseq_to_unigene0.050.000.05
MM_refseq_to_uniprot_genename0.050.000.04
MM_refseq_to_uniprot_genename_transcript_name000
MM_refseq_to_uniprot_sptrembl000
MM_refseq_to_uniprot_swissprot000
MM_refseq_to_uniprot_swissprot_accession0.020.000.01
MM_refseq_to_wikigene_id000
MM_refseq_to_wikigene_name0.040.000.05
TBL21.130.011.14
TBL2_HS1.850.051.90
TBL2_MM1.000.081.08
conv_id000
id_conv0.030.010.05

miRNATarget.Rcheck/examples_x64/miRNATarget-Ex.timings:

nameusersystemelapsed
HS_conv_id0.010.000.01
HS_refseq_to_affy_hc_g1100.020.000.02
HS_refseq_to_affy_hg_focus0.030.000.03
HS_refseq_to_affy_hg_u133_plus_20.080.000.08
HS_refseq_to_affy_hg_u133a0.040.000.04
HS_refseq_to_affy_hg_u133a_20.050.000.05
HS_refseq_to_affy_hg_u133b0.020.010.03
HS_refseq_to_affy_hg_u95a0.030.000.03
HS_refseq_to_affy_hg_u95av20.040.020.07
HS_refseq_to_affy_hg_u95b0.040.000.03
HS_refseq_to_affy_hg_u95c0.010.000.01
HS_refseq_to_affy_hg_u95d000
HS_refseq_to_affy_hg_u95e0.010.000.01
HS_refseq_to_affy_huex_1_0_st_v21.330.011.35
HS_refseq_to_affy_hugene_1_0_st_v10.050.020.06
HS_refseq_to_affy_hugenefl0.020.000.02
HS_refseq_to_affy_u133_x3p0.090.000.09
HS_refseq_to_agilent_cgh_44b0.020.000.02
HS_refseq_to_agilent_wholegenome0.090.000.09
HS_refseq_to_canonical_transcript_stable_id0.090.000.10
HS_refseq_to_ccds0.050.000.04
HS_refseq_to_codelink0.050.000.05
HS_refseq_to_efg_agilent_sureprint_g3_ge_8x60k0.010.000.02
HS_refseq_to_efg_agilent_wholegenome_4x44k_v1000
HS_refseq_to_efg_agilent_wholegenome_4x44k_v2000
HS_refseq_to_embl0.920.010.93
HS_refseq_to_ensembl_exon_id000
HS_refseq_to_ensembl_gene_id0.080.000.08
HS_refseq_to_ensembl_peptide_id0.050.000.05
HS_refseq_to_ensembl_transcript_id0.070.000.07
HS_refseq_to_entrezgene0.080.000.08
HS_refseq_to_hgnc_id0.070.000.06
HS_refseq_to_hgnc_symbol0.060.000.07
HS_refseq_to_hgnc_transcript_name0.040.020.06
HS_refseq_to_illumina_humanht_120.070.000.06
HS_refseq_to_illumina_humanwg_6_v10.150.020.17
HS_refseq_to_illumina_humanwg_6_v20.050.000.05
HS_refseq_to_illumina_humanwg_6_v30.060.000.06
HS_refseq_to_interpro0.160.000.16
HS_refseq_to_ipi0.140.000.14
HS_refseq_to_merops0.010.000.01
HS_refseq_to_pdb0.410.000.41
HS_refseq_to_pfam0.110.000.11
HS_refseq_to_phalanx_onearray0.050.000.05
HS_refseq_to_protein_id1.10.01.1
HS_refseq_to_refseq_dna0.080.000.08
HS_refseq_to_refseq_genomic000
HS_refseq_to_refseq_peptide0.110.010.13
HS_refseq_to_rfam0.020.000.01
HS_refseq_to_rfam_gene_name000
HS_refseq_to_rfam_transcript_name000
HS_refseq_to_smart0.040.000.05
HS_refseq_to_tigrfam0.000.020.01
HS_refseq_to_ucsc0.130.000.13
HS_refseq_to_unigene0.080.000.08
HS_refseq_to_uniprot_genename0.040.010.06
HS_refseq_to_uniprot_genename_transcript_name000
HS_refseq_to_uniprot_sptrembl0.000.020.02
HS_refseq_to_uniprot_swissprot000
HS_refseq_to_uniprot_swissprot_accession000
HS_refseq_to_wikigene_id000
HS_refseq_to_wikigene_name0.220.000.22
MM_conv_id000
MM_refseq_to_affy_mg_u74a0.020.000.02
MM_refseq_to_affy_mg_u74av20.010.000.02
MM_refseq_to_affy_mg_u74b0.020.000.01
MM_refseq_to_affy_mg_u74bv20.010.000.02
MM_refseq_to_affy_mg_u74c000
MM_refseq_to_affy_mg_u74cv20.020.000.02
MM_refseq_to_affy_moe430a0.030.000.03
MM_refseq_to_affy_moe430b0.000.010.02
MM_refseq_to_affy_moex_1_0_st_v10.410.020.42
MM_refseq_to_affy_mogene_1_0_st_v10.040.000.05
MM_refseq_to_affy_mouse430_20.070.000.06
MM_refseq_to_affy_mouse430a_20.030.010.05
MM_refseq_to_affy_mu11ksuba0.010.000.01
MM_refseq_to_affy_mu11ksubb0.020.000.02
MM_refseq_to_agilent_wholegenome0.060.000.06
MM_refseq_to_canonical_transcript_stable_id0.060.020.08
MM_refseq_to_ccds0.100.000.09
MM_refseq_to_codelink0.030.000.03
MM_refseq_to_efg_agilent_sureprint_g3_ge_8x60k0.010.000.02
MM_refseq_to_efg_agilent_wholegenome_4x44k_v1000
MM_refseq_to_efg_agilent_wholegenome_4x44k_v20.020.000.02
MM_refseq_to_embl0.340.000.34
MM_refseq_to_ensembl_exon_id000
MM_refseq_to_ensembl_gene_id0.030.020.05
MM_refseq_to_ensembl_peptide_id0.040.010.04
MM_refseq_to_ensembl_transcript_id0.060.000.06
MM_refseq_to_entrezgene0.030.000.04
MM_refseq_to_fantom0.230.020.25
MM_refseq_to_illumina_mousewg_6_v10.20.00.2
MM_refseq_to_illumina_mousewg_6_v20.060.000.07
MM_refseq_to_interpro0.110.000.11
MM_refseq_to_ipi0.000.010.01
MM_refseq_to_merops000
MM_refseq_to_mgi_id0.050.000.05
MM_refseq_to_mgi_symbol0.050.000.04
MM_refseq_to_mgi_transcript_name0.040.000.05
MM_refseq_to_pdb0.070.000.06
MM_refseq_to_pfam0.060.020.08
MM_refseq_to_phalanx_onearray0.030.000.03
MM_refseq_to_protein_id0.360.010.38
MM_refseq_to_refseq_dna0.260.000.26
MM_refseq_to_refseq_peptide0.080.000.08
MM_refseq_to_rfam0.000.020.02
MM_refseq_to_rfam_gene_name000
MM_refseq_to_rfam_transcript_name000
MM_refseq_to_smart0.020.020.03
MM_refseq_to_tigrfam000
MM_refseq_to_ucsc0.050.000.05
MM_refseq_to_unigene0.030.010.05
MM_refseq_to_uniprot_genename0.050.000.04
MM_refseq_to_uniprot_genename_transcript_name000
MM_refseq_to_uniprot_sptrembl0.010.000.02
MM_refseq_to_uniprot_swissprot000
MM_refseq_to_uniprot_swissprot_accession000
MM_refseq_to_wikigene_id0.020.000.01
MM_refseq_to_wikigene_name0.030.000.04
TBL21.060.031.09
TBL2_HS2.340.162.50
TBL2_MM1.000.061.06
conv_id000
id_conv0.030.000.03