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This page was generated on 2015-10-07 16:21:03 -0700 (Wed, 07 Oct 2015).
| Package 77/241 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | |||||
| facopy.annot 0.102.0 David Mosen-Ansorena
| zin2 | Linux (Ubuntu 14.04.2 LTS) / x86_64 | NotNeeded | OK | [ OK ] |  | |||||
| moscato2 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | NotNeeded | OK | OK | OK | ||||||
| petty | Mac OS X Snow Leopard (10.6.8) / x86_64 | NotNeeded | OK | OK | OK |
| Package: facopy.annot |
| Version: 0.102.0 |
| Command: /home/biocbuild/bbs-3.1-bioc/R/bin/R CMD check --no-vignettes --timings facopy.annot_0.102.0.tar.gz |
| StartedAt: 2015-10-07 09:41:00 -0700 (Wed, 07 Oct 2015) |
| EndedAt: 2015-10-07 09:41:46 -0700 (Wed, 07 Oct 2015) |
| EllapsedTime: 46.0 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: facopy.annot.Rcheck |
| Warnings: 0 |
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### Running command:
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### /home/biocbuild/bbs-3.1-bioc/R/bin/R CMD check --no-vignettes --timings facopy.annot_0.102.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.1-data-experiment/meat/facopy.annot.Rcheck’
* using R version 3.2.2 (2015-08-14)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘facopy.annot/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘facopy.annot’ version ‘0.102.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘facopy.annot’ can be installed ... [2s/4s] OK
* checking installed package size ... NOTE
installed size is 6.2Mb
sub-directories of 1Mb or more:
data 5.9Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... [3s/5s] OK
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
‘/home/biocbuild/bbs-3.1-data-experiment/meat/facopy.annot.Rcheck/00check.log’
for details.
facopy.annot.Rcheck/00install.out:
* installing *source* package ‘facopy.annot’ ... ** data ** inst ** help *** installing help indices ** building package indices ** testing if installed package can be loaded * DONE (facopy.annot)
facopy.annot.Rcheck/facopy.annot-Ex.timings:
| name | user | system | elapsed | |
| hg18_armLimits | 0.015 | 0.004 | 0.042 | |
| hg18_db_gsk_bladder | 0.013 | 0.000 | 0.034 | |
| hg18_db_gsk_blood | 0.019 | 0.000 | 0.035 | |
| hg18_db_gsk_bone | 0.011 | 0.000 | 0.023 | |
| hg18_db_gsk_brain | 0.015 | 0.000 | 0.015 | |
| hg18_db_gsk_breast | 0.017 | 0.000 | 0.017 | |
| hg18_db_gsk_cervix | 0.013 | 0.000 | 0.013 | |
| hg18_db_gsk_cns | 0.016 | 0.000 | 0.016 | |
| hg18_db_gsk_colon | 0.016 | 0.000 | 0.016 | |
| hg18_db_gsk_connective_tissue | 0.011 | 0.000 | 0.012 | |
| hg18_db_gsk_esophagus | 0.013 | 0.000 | 0.013 | |
| hg18_db_gsk_eye | 0.004 | 0.000 | 0.004 | |
| hg18_db_gsk_kidney | 0.012 | 0.000 | 0.012 | |
| hg18_db_gsk_liver | 0.016 | 0.000 | 0.017 | |
| hg18_db_gsk_lung | 0.020 | 0.000 | 0.035 | |
| hg18_db_gsk_muscle | 0.011 | 0.000 | 0.035 | |
| hg18_db_gsk_ovary | 0.014 | 0.000 | 0.026 | |
| hg18_db_gsk_pancreas | 0.013 | 0.000 | 0.025 | |
| hg18_db_gsk_pharynx | 0.010 | 0.000 | 0.042 | |
| hg18_db_gsk_placenta | 0.013 | 0.000 | 0.025 | |
| hg18_db_gsk_prostate | 0.011 | 0.000 | 0.044 | |
| hg18_db_gsk_rectum | 0.010 | 0.001 | 0.026 | |
| hg18_db_gsk_sarcoma | 0.008 | 0.000 | 0.018 | |
| hg18_db_gsk_stomach | 0.012 | 0.000 | 0.066 | |
| hg18_db_gsk_synovium | 0.003 | 0.000 | 0.003 | |
| hg18_db_gsk_thyroid | 0.012 | 0.000 | 0.043 | |
| hg18_db_gsk_uterus | 0.014 | 0.000 | 0.031 | |
| hg18_db_nci60 | 0.021 | 0.000 | 0.030 | |
| hg18_db_tcga_blca | 0.021 | 0.000 | 0.050 | |
| hg18_db_tcga_brca | 0.037 | 0.000 | 0.064 | |
| hg18_db_tcga_cesc | 0.019 | 0.000 | 0.022 | |
| hg18_db_tcga_coad | 0.020 | 0.000 | 0.025 | |
| hg18_db_tcga_gbm | 0.020 | 0.000 | 0.025 | |
| hg18_db_tcga_hnsc | 0.020 | 0.000 | 0.023 | |
| hg18_db_tcga_kirc | 0.020 | 0.000 | 0.022 | |
| hg18_db_tcga_kirp | 0.02 | 0.00 | 0.02 | |
| hg18_db_tcga_lgg | 0.020 | 0.000 | 0.019 | |
| hg18_db_tcga_lihc | 0.020 | 0.000 | 0.045 | |
| hg18_db_tcga_luad | 0.021 | 0.000 | 0.033 | |
| hg18_db_tcga_lusc | 0.018 | 0.003 | 0.059 | |
| hg18_db_tcga_ov | 0.021 | 0.000 | 0.060 | |
| hg18_db_tcga_prad | 0.019 | 0.000 | 0.055 | |
| hg18_db_tcga_read | 0.02 | 0.00 | 0.02 | |
| hg18_db_tcga_stad | 0.019 | 0.000 | 0.019 | |
| hg18_db_tcga_thca | 0.018 | 0.000 | 0.038 | |
| hg18_db_tcga_ucec | 0.020 | 0.000 | 0.055 | |
| hg18_feature_cancergene | 0.005 | 0.000 | 0.005 | |
| hg18_feature_ensembl | 0.147 | 0.000 | 0.290 | |
| hg18_feature_lincRNA | 0.018 | 0.000 | 0.020 | |
| hg18_feature_mirnas | 0.006 | 0.000 | 0.006 | |
| hg18_feature_oncogene | 0.003 | 0.000 | 0.003 | |
| hg18_feature_tumorsupressor | 0.004 | 0.000 | 0.004 | |
| hg19_armLimits | 0.002 | 0.000 | 0.002 | |
| hg19_db_gsk_bladder | 0.014 | 0.000 | 0.017 | |
| hg19_db_gsk_blood | 0.017 | 0.004 | 0.021 | |
| hg19_db_gsk_bone | 0.011 | 0.000 | 0.029 | |
| hg19_db_gsk_brain | 0.010 | 0.004 | 0.022 | |
| hg19_db_gsk_breast | 0.021 | 0.000 | 0.045 | |
| hg19_db_gsk_cervix | 0.013 | 0.000 | 0.031 | |
| hg19_db_gsk_cns | 0.016 | 0.000 | 0.032 | |
| hg19_db_gsk_colon | 0.016 | 0.000 | 0.064 | |
| hg19_db_gsk_connective_tissue | 0.014 | 0.000 | 0.023 | |
| hg19_db_gsk_esophagus | 0.012 | 0.000 | 0.013 | |
| hg19_db_gsk_eye | 0.004 | 0.000 | 0.004 | |
| hg19_db_gsk_kidney | 0.012 | 0.000 | 0.012 | |
| hg19_db_gsk_liver | 0.018 | 0.000 | 0.018 | |
| hg19_db_gsk_lung | 0.02 | 0.00 | 0.02 | |
| hg19_db_gsk_muscle | 0.007 | 0.004 | 0.011 | |
| hg19_db_gsk_ovary | 0.013 | 0.000 | 0.026 | |
| hg19_db_gsk_pancreas | 0.016 | 0.000 | 0.040 | |
| hg19_db_gsk_pharynx | 0.010 | 0.000 | 0.019 | |
| hg19_db_gsk_placenta | 0.012 | 0.000 | 0.020 | |
| hg19_db_gsk_prostate | 0.015 | 0.000 | 0.031 | |
| hg19_db_gsk_rectum | 0.012 | 0.000 | 0.034 | |
| hg19_db_gsk_sarcoma | 0.008 | 0.000 | 0.007 | |
| hg19_db_gsk_stomach | 0.012 | 0.000 | 0.029 | |
| hg19_db_gsk_synovium | 0.003 | 0.000 | 0.014 | |
| hg19_db_gsk_thyroid | 0.008 | 0.004 | 0.017 | |
| hg19_db_gsk_uterus | 0.015 | 0.000 | 0.027 | |
| hg19_db_nci60 | 0.020 | 0.000 | 0.044 | |
| hg19_db_tcga_blca | 0.022 | 0.000 | 0.049 | |
| hg19_db_tcga_brca | 0.021 | 0.000 | 0.036 | |
| hg19_db_tcga_cesc | 0.022 | 0.000 | 0.046 | |
| hg19_db_tcga_coad | 0.022 | 0.000 | 0.125 | |
| hg19_db_tcga_gbm | 0.024 | 0.000 | 0.048 | |
| hg19_db_tcga_hnsc | 0.021 | 0.000 | 0.044 | |
| hg19_db_tcga_kirc | 0.02 | 0.00 | 0.04 | |
| hg19_db_tcga_kirp | 0.018 | 0.003 | 0.025 | |
| hg19_db_tcga_lgg | 0.018 | 0.000 | 0.018 | |
| hg19_db_tcga_lihc | 0.02 | 0.00 | 0.02 | |
| hg19_db_tcga_luad | 0.022 | 0.000 | 0.022 | |
| hg19_db_tcga_lusc | 0.02 | 0.00 | 0.02 | |
| hg19_db_tcga_ov | 0.022 | 0.000 | 0.022 | |
| hg19_db_tcga_prad | 0.018 | 0.000 | 0.018 | |
| hg19_db_tcga_read | 0.022 | 0.000 | 0.022 | |
| hg19_db_tcga_stad | 0.020 | 0.000 | 0.019 | |
| hg19_db_tcga_thca | 0.018 | 0.001 | 0.019 | |
| hg19_db_tcga_ucec | 0.020 | 0.000 | 0.028 | |
| hg19_feature_cancergene | 0.002 | 0.003 | 0.033 | |
| hg19_feature_ensembl | 0.230 | 0.004 | 0.321 | |
| hg19_feature_lincRNA | 0.019 | 0.000 | 0.020 | |
| hg19_feature_mirnas | 0.011 | 0.008 | 0.019 | |
| hg19_feature_oncogene | 0.004 | 0.000 | 0.004 | |
| hg19_feature_tumorsupressor | 0.004 | 0.000 | 0.004 | |
| mm8_armLimits | 0.002 | 0.000 | 0.002 | |
| mm8_feature_ensembl | 0.276 | 0.000 | 0.500 | |
| mm8_feature_mirnas | 0.006 | 0.000 | 0.007 | |