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BioC experimental data: CHECK report for DmelSGI on petty

This page was generated on 2015-10-07 16:21:56 -0700 (Wed, 07 Oct 2015).

Package 62/241HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
DmelSGI 1.0.0
Bernd Fischer
Snapshot Date: 2015-10-07 07:15:35 -0700 (Wed, 07 Oct 2015)
URL: https://hedgehog.fhcrc.org/bioc-data/branches/RELEASE_3_1/experiment/pkgs/DmelSGI
Last Changed Rev: 3279 / Revision: 3442
Last Changed Date: 2015-04-16 13:16:53 -0700 (Thu, 16 Apr 2015)
zin2 Linux (Ubuntu 14.04.2 LTS) / x86_64  NotNeeded  OK  OK UNNEEDED, same version exists in internal repository
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  NotNeeded  OK  OK  OK 
petty Mac OS X Snow Leopard (10.6.8) / x86_64  NotNeeded  OK [ OK ] OK 

Summary

Package: DmelSGI
Version: 1.0.0
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings DmelSGI_1.0.0.tar.gz
StartedAt: 2015-10-07 09:14:30 -0700 (Wed, 07 Oct 2015)
EndedAt: 2015-10-07 09:15:53 -0700 (Wed, 07 Oct 2015)
EllapsedTime: 82.6 seconds
RetCode: 0
Status:  OK 
CheckDir: DmelSGI.Rcheck
Warnings: 0

Command output

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### Running command:
###
###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings DmelSGI_1.0.0.tar.gz
###
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* using log directory ‘/Users/biocbuild/bbs-3.1-data-experiment/meat/DmelSGI.Rcheck’
* using R version 3.2.2 Patched (2015-08-14 r69078)
* using platform: x86_64-apple-darwin10.8.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘DmelSGI/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘DmelSGI’ version ‘1.0.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘DmelSGI’ can be installed ... [3s/7s] OK
* checking installed package size ... NOTE
  installed size is 141.2Mb
  sub-directories of 1Mb or more:
    data      137.3Mb
    doc         2.0Mb
    Rscripts    1.7Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [16s/17s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  ‘/Users/biocbuild/bbs-3.1-data-experiment/meat/DmelSGI.Rcheck/00check.log’
for details.


DmelSGI.Rcheck/00install.out:

* installing *source* package ‘DmelSGI’ ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (DmelSGI)

DmelSGI.Rcheck/DmelSGI-Ex.timings:

nameusersystemelapsed
ChromatinSet-package4.6420.1944.861
DPiM0.0220.0010.023
FBgn2anno0.4840.0470.530
Features0.0050.0010.005
Interactions2.3870.1012.492
Intogen0.0130.0000.014
RohnEtAl0.0030.0000.004
SKDdata0.4480.0410.498
SelectedClusters0.0020.0000.002
SelectedClustersComplexes0.0020.0010.003
TID2HUGO0.0080.0000.009
applyDimensionReduction0.0030.0000.004
callInteractions0.0030.0000.002
datamatrix4.7300.0954.843
estimatePairwiseInteractions0.0040.0000.004
fitepistasis0.2360.0300.267
getBaseDir0.0010.0010.002
grid.spider0.0030.0000.004
hrNames0.0010.0010.001
learnCoComplexityFct0.0030.0000.003
mainEffects0.0900.0040.095
myHeatmap0.0020.0000.003
mymedpolish0.0020.0000.003
orderDim0.0010.0010.001
orderSpiderAxis0.0010.0000.001
pimatrix0.7060.0430.750
plot2Phenotypes0.0040.0010.004
plotHairballLabels0.0020.0000.001
qualityControlFeature0.0040.0000.005
qualityControlGene0.0220.0360.058
selectByStability0.0020.0000.003
stabilitySelection0.1490.0120.161
subSampleForStabilitySelection0.0770.0100.086
subSampleForStabilitySelectionFct0.0010.0000.002
toMatrix0.0010.0000.001
toRaster0.0010.0000.001
trsf0.0000.0000.001