BioC 3.1: CHECK report for mzID on moscato2

Package: mzID

Version: 1.6.0

Command: rm -rf mzID.buildbin-libdir mzID.Rcheck && mkdir mzID.buildbin-libdir mzID.Rcheck && E:\biocbld\bbs-3.1-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=mzID.buildbin-libdir mzID_1.6.0.tar.gz >mzID.Rcheck\00install.out 2>&1 && cp mzID.Rcheck\00install.out mzID-install.out && E:\biocbld\bbs-3.1-bioc\R\bin\R.exe CMD check --library=mzID.buildbin-libdir --install="check:mzID-install.out" --force-multiarch --no-vignettes --timings mzID_1.6.0.tar.gz

StartedAt: 2015-10-09 04:17:06 -0700 (Fri, 09 Oct 2015)

EndedAt: 2015-10-09 04:18:12 -0700 (Fri, 09 Oct 2015)

EllapsedTime: 66.0 seconds

RetCode: 0

Status:  OK

CheckDir: mzID.Rcheck

Warnings: 0

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf mzID.buildbin-libdir mzID.Rcheck && mkdir mzID.buildbin-libdir mzID.Rcheck && E:\biocbld\bbs-3.1-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=mzID.buildbin-libdir mzID_1.6.0.tar.gz >mzID.Rcheck\00install.out 2>&1 && cp mzID.Rcheck\00install.out mzID-install.out  && E:\biocbld\bbs-3.1-bioc\R\bin\R.exe CMD check --library=mzID.buildbin-libdir --install="check:mzID-install.out" --force-multiarch --no-vignettes --timings mzID_1.6.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'E:/biocbld/bbs-3.1-bioc/meat/mzID.Rcheck'
* using R version 3.2.2 (2015-08-14)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'mzID/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'mzID' version '1.6.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'mzID' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
mzID: no visible binding for global variable 'i'
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... [9s] OK
Examples with CPU or elapsed time > 5s
     user system elapsed
mzID 2.57      0    6.35
** running examples for arch 'x64' ... [9s] OK
Examples with CPU or elapsed time > 5s
     user system elapsed
mzID 3.08   0.03    6.04
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
  Running 'test-all.R' [1s]
 [1s] OK
** running tests for arch 'x64' ...
  Running 'test-all.R' [1s]
 [1s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  'E:/biocbld/bbs-3.1-bioc/meat/mzID.Rcheck/00check.log'
for details.

install for i386

* installing *source* package 'mzID' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'mzID' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'mzID' as mzID_1.6.0.zip
* DONE (mzID)

name	user	system	elapsed
flatten	0.51	0.00	1.08
mzID	2.57	0.00	6.35

name	user	system	elapsed
flatten	0.53	0.02	1.40
mzID	3.08	0.03	6.04