flowWorkspace 3.14.9
Greg Finak ,Mike Jiang
| Snapshot Date: 2015-10-08 17:20:21 -0700 (Thu, 08 Oct 2015) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_1/madman/Rpacks/flowWorkspace | | Last Changed Rev: 109381 / Revision: 109384 | | Last Changed Date: 2015-10-08 13:47:36 -0700 (Thu, 08 Oct 2015) |
| zin2 | Linux (Ubuntu 14.04.2 LTS) / x86_64 | OK | OK | OK | |  |
| moscato2 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | OK | OK | OK | OK | |
| petty | Mac OS X Snow Leopard (10.6.8) / x86_64 | OK | OK | OK | OK | |
| morelia | Mac OS X Mavericks (10.9.5) / x86_64 | OK | OK | OK | [ OK ] | |
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###
### Running command:
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### rm -rf flowWorkspace.buildbin-libdir && mkdir flowWorkspace.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh flowWorkspace_3.14.9.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R flowWorkspace.buildbin-libdir
###
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>>>>>>>
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=flowWorkspace.buildbin-libdir flowWorkspace_3.14.9.tar.gz'
>>>>>>>
* installing *source* package ‘flowWorkspace’ ...
checking for g++... g++
checking whether the C++ compiler works... yes
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configure: setting xml2 flags...
configure: No directory was specified for --with-xml2. Trying to find xml2 using other methods.
checking for xml2-config... /usr/bin/xml2-config
configure: setting protobuf flags...
configure: No directory was specified for --with-protobuf. Using bundled protocol buffer.
found protobuf-2.6.0 header sources and tar archive;using what is there.
libtoolize: putting auxiliary files in '.'.
libtoolize: copying file './ltmain.sh'
libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'.
libtoolize: copying file 'm4/libtool.m4'
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libtoolize: copying file 'm4/lt˜obsolete.m4'
configure.ac:45: installing './compile'
configure.ac:32: installing './missing'
/usr/local/share/automake-1.14/am/ltlibrary.am: warning: 'libprotobuf.la': linking libtool libraries using a non-POSIX
/usr/local/share/automake-1.14/am/ltlibrary.am: archiver requires 'AM_PROG_AR' in 'configure.ac'
src/Makefile.am:81: while processing Libtool library 'libprotobuf.la'
src/Makefile.am: installing './depcomp'
building protobuf...
found pb_build ;using what is there.
checking whether to enable maintainer-specific portions of Makefiles... yes
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configure: creating ./config.status
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config.status: config.h is unchanged
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CDPATH="${ZSH_VERSION+.}:" && cd ../protobuf-2.6.0 && /bin/sh /private/tmp/RtmpEavbmN/R.INSTALL16f8f4e780143/flowWorkspace/src/protobuf-2.6.0/missing aclocal-1.14 -I m4
cd ../protobuf-2.6.0 && /bin/sh /private/tmp/RtmpEavbmN/R.INSTALL16f8f4e780143/flowWorkspace/src/protobuf-2.6.0/missing automake-1.14 --foreign
CDPATH="${ZSH_VERSION+.}:" && cd ../protobuf-2.6.0 && /bin/sh /private/tmp/RtmpEavbmN/R.INSTALL16f8f4e780143/flowWorkspace/src/protobuf-2.6.0/missing autoconf
/bin/sh ./config.status --recheck
running CONFIG_SHELL=/bin/sh /bin/sh ../protobuf-2.6.0/configure --enable-static=no --no-create --no-recursion
checking whether to enable maintainer-specific portions of Makefiles... yes
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checking for suffix of executables...
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checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking whether gcc understands -c and -o together... yes
checking for style of include used by make... GNU
checking dependency style of gcc... gcc3
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checking whether we are using the GNU C++ compiler... yes
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checking dynamic linker characteristics... darwin13.4.0 dyld
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checking fcntl.h usability... yes
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checking zlib version... ok (1.2.0.4 or later)
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configure: WARNING: Impossible to determine how to use pthreads with shared libraries and -nostdlib
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checking that generated files are newer than configure... done
configure: creating ./config.status
/bin/sh ./config.status
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config.status: creating protobuf.pc
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config.status: creating config.h
config.status: config.h is unchanged
config.status: executing depfiles commands
config.status: executing libtool commands
(CDPATH="${ZSH_VERSION+.}:" && cd ../protobuf-2.6.0 && /bin/sh /private/tmp/RtmpEavbmN/R.INSTALL16f8f4e780143/flowWorkspace/src/protobuf-2.6.0/missing autoheader)
rm -f stamp-h1
touch ../protobuf-2.6.0/config.h.in
make all-recursive
Making all in .
cd . && /bin/sh ./config.status config.h
config.status: creating config.h
config.status: config.h is unchanged
Making all in src
depbase=`echo google/protobuf/stubs/atomicops_internals_x86_gcc.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
/bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../../protobuf-2.6.0/src -I.. -D_THREAD_SAFE -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -Wno-return-type -O2 -g -DNDEBUG -MT google/protobuf/stubs/atomicops_internals_x86_gcc.lo -MD -MP -MF $depbase.Tpo -c -o google/protobuf/stubs/atomicops_internals_x86_gcc.lo ../../protobuf-2.6.0/src/google/protobuf/stubs/atomicops_internals_x86_gcc.cc &&\
mv -f $depbase.Tpo $depbase.Plo
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../../protobuf-2.6.0/src -I.. -D_THREAD_SAFE -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -Wno-return-type -O2 -g -DNDEBUG -MT google/protobuf/stubs/atomicops_internals_x86_gcc.lo -MD -MP -MF google/protobuf/stubs/.deps/atomicops_internals_x86_gcc.Tpo -c ../../protobuf-2.6.0/src/google/protobuf/stubs/atomicops_internals_x86_gcc.cc -fno-common -DPIC -o google/protobuf/stubs/.libs/atomicops_internals_x86_gcc.o
depbase=`echo google/protobuf/stubs/atomicops_internals_x86_msvc.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
/bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../../protobuf-2.6.0/src -I.. -D_THREAD_SAFE -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -Wno-return-type -O2 -g -DNDEBUG -MT google/protobuf/stubs/atomicops_internals_x86_msvc.lo -MD -MP -MF $depbase.Tpo -c -o google/protobuf/stubs/atomicops_internals_x86_msvc.lo ../../protobuf-2.6.0/src/google/protobuf/stubs/atomicops_internals_x86_msvc.cc &&\
mv -f $depbase.Tpo $depbase.Plo
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../../protobuf-2.6.0/src -I.. -D_THREAD_SAFE -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -Wno-return-type -O2 -g -DNDEBUG -MT google/protobuf/stubs/atomicops_internals_x86_msvc.lo -MD -MP -MF google/protobuf/stubs/.deps/atomicops_internals_x86_msvc.Tpo -c ../../protobuf-2.6.0/src/google/protobuf/stubs/atomicops_internals_x86_msvc.cc -fno-common -DPIC -o google/protobuf/stubs/.libs/atomicops_internals_x86_msvc.o
depbase=`echo google/protobuf/stubs/common.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
/bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../../protobuf-2.6.0/src -I.. -D_THREAD_SAFE -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -Wno-return-type -O2 -g -DNDEBUG -MT google/protobuf/stubs/common.lo -MD -MP -MF $depbase.Tpo -c -o google/protobuf/stubs/common.lo ../../protobuf-2.6.0/src/google/protobuf/stubs/common.cc &&\
mv -f $depbase.Tpo $depbase.Plo
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../../protobuf-2.6.0/src -I.. -D_THREAD_SAFE -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -Wno-return-type -O2 -g -DNDEBUG -MT google/protobuf/stubs/common.lo -MD -MP -MF google/protobuf/stubs/.deps/common.Tpo -c ../../protobuf-2.6.0/src/google/protobuf/stubs/common.cc -fno-common -DPIC -o google/protobuf/stubs/.libs/common.o
depbase=`echo google/protobuf/stubs/once.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
/bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../../protobuf-2.6.0/src -I.. -D_THREAD_SAFE -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -Wno-return-type -O2 -g -DNDEBUG -MT google/protobuf/stubs/once.lo -MD -MP -MF $depbase.Tpo -c -o google/protobuf/stubs/once.lo ../../protobuf-2.6.0/src/google/protobuf/stubs/once.cc &&\
mv -f $depbase.Tpo $depbase.Plo
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../../protobuf-2.6.0/src -I.. -D_THREAD_SAFE -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -Wno-return-type -O2 -g -DNDEBUG -MT google/protobuf/stubs/once.lo -MD -MP -MF google/protobuf/stubs/.deps/once.Tpo -c ../../protobuf-2.6.0/src/google/protobuf/stubs/once.cc -fno-common -DPIC -o google/protobuf/stubs/.libs/once.o
depbase=`echo google/protobuf/stubs/stringprintf.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
/bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../../protobuf-2.6.0/src -I.. -D_THREAD_SAFE -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -Wno-return-type -O2 -g -DNDEBUG -MT google/protobuf/stubs/stringprintf.lo -MD -MP -MF $depbase.Tpo -c -o google/protobuf/stubs/stringprintf.lo ../../protobuf-2.6.0/src/google/protobuf/stubs/stringprintf.cc &&\
mv -f $depbase.Tpo $depbase.Plo
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../../protobuf-2.6.0/src -I.. -D_THREAD_SAFE -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -Wno-return-type -O2 -g -DNDEBUG -MT google/protobuf/stubs/stringprintf.lo -MD -MP -MF google/protobuf/stubs/.deps/stringprintf.Tpo -c ../../protobuf-2.6.0/src/google/protobuf/stubs/stringprintf.cc -fno-common -DPIC -o google/protobuf/stubs/.libs/stringprintf.o
depbase=`echo google/protobuf/extension_set.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
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../../protobuf-2.6.0/src/google/protobuf/wire_format.cc:60:12: warning: unused function 'GetEnumNumber' [-Wunused-function]
inline int GetEnumNumber(const EnumValueDescriptor* descriptor) {
^
1 warning generated.
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configure: Using the following compilation and linking flags for flowWorkspace
configure: PKG_CPPFLAGS=-I/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.10.sdk/usr/include/libxml2 -Iprotobuf-2.6.0/src -ftemplate-depth=900
configure: PKG_LIBS=-lxml2
configure: creating ./config.status
config.status: creating src/Makevars
** libs
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -DROUT -I/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.10.sdk/usr/include/libxml2 -Iprotobuf-2.6.0/src -ftemplate-depth=900 -Iboost_serialization -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include" -fPIC -Wall -mtune=core2 -g -O2 -c GatingHierarchy.cpp -o GatingHierarchy.o
In file included from GatingHierarchy.cpp:8:
In file included from ./include/GatingHierarchy.hpp:13:
In file included from ./include/populationTree.hpp:11:
In file included from ./include/nodeProperties.hpp:11:
In file included from ./include/POPINDICES.hpp:15:
In file included from ./include/gate.hpp:14:
In file included from ./include/flowData.hpp:24:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/archive/text_iarchive.hpp:24:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/archive/basic_text_iarchive.hpp:31:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/archive/detail/common_iarchive.hpp:23:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/archive/detail/interface_iarchive.hpp:22:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/archive/detail/iserializer.hpp:46:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/serialization/extended_type_info_typeid.hpp:27:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/serialization/static_warning.hpp:73:
/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/mpl/print.hpp:50:19: warning: in-class initialization of non-static data member is a C++11 extension [-Wc++11-extensions]
const int m_x = 1 / (sizeof(T) - sizeof(T));
^
1 warning generated.
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -DROUT -I/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.10.sdk/usr/include/libxml2 -Iprotobuf-2.6.0/src -ftemplate-depth=900 -Iboost_serialization -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include" -fPIC -Wall -mtune=core2 -g -O2 -c GatingSet.cpp -o GatingSet.o
In file included from GatingSet.cpp:9:
In file included from ./include/GatingSet.hpp:12:
In file included from ./include/GatingHierarchy.hpp:13:
In file included from ./include/populationTree.hpp:11:
In file included from ./include/nodeProperties.hpp:11:
In file included from ./include/POPINDICES.hpp:15:
In file included from ./include/gate.hpp:14:
In file included from ./include/flowData.hpp:24:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/archive/text_iarchive.hpp:24:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/archive/basic_text_iarchive.hpp:31:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/archive/detail/common_iarchive.hpp:23:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/archive/detail/interface_iarchive.hpp:22:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/archive/detail/iserializer.hpp:46:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/serialization/extended_type_info_typeid.hpp:27:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/serialization/static_warning.hpp:73:
/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/mpl/print.hpp:50:19: warning: in-class initialization of non-static data member is a C++11 extension [-Wc++11-extensions]
const int m_x = 1 / (sizeof(T) - sizeof(T));
^
In file included from GatingSet.cpp:9:
In file included from ./include/GatingSet.hpp:12:
In file included from ./include/GatingHierarchy.hpp:13:
In file included from ./include/populationTree.hpp:11:
In file included from ./include/nodeProperties.hpp:11:
In file included from ./include/POPINDICES.hpp:15:
In file included from ./include/gate.hpp:14:
In file included from ./include/flowData.hpp:24:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/archive/text_iarchive.hpp:24:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/archive/basic_text_iarchive.hpp:31:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/archive/detail/common_iarchive.hpp:23:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/archive/detail/interface_iarchive.hpp:22:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/archive/detail/iserializer.hpp:46:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/serialization/extended_type_info_typeid.hpp:37:
/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/serialization/access.hpp:125:9: warning: delete called on 'trans_global' that has virtual functions but non-virtual destructor [-Wdelete-non-virtual-dtor]
delete const_cast<T *>(t);
^
/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/serialization/extended_type_info_typeid.hpp:133:39: note: in instantiation of function template specialization 'boost::serialization::access::destroy<trans_global>' requested here
boost::serialization::access::destroy(
^
/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/serialization/singleton.hpp:106:7: note: in instantiation of member function 'boost::serialization::extended_type_info_typeid<trans_global>::destroy' requested here
class singleton_wrapper : public T
^
/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/serialization/singleton.hpp:141:16: note: in instantiation of member function 'boost::serialization::singleton<boost::serialization::extended_type_info_typeid<trans_global> >::get_instance' requested here
return get_instance();
^
/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/archive/detail/oserializer.hpp:111:16: note: in instantiation of member function 'boost::serialization::singleton<boost::serialization::extended_type_info_typeid<trans_global> >::get_const_instance' requested here
>::get_const_instance()
^
/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/serialization/singleton.hpp:106:7: note: in instantiation of member function 'boost::archive::detail::oserializer<boost::archive::binary_oarchive, trans_global>::oserializer' requested here
class singleton_wrapper : public T
^
/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/serialization/singleton.hpp:141:16: note: (skipping 86 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all)
return get_instance();
^
/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/archive/detail/common_oarchive.hpp:69:18: note: in instantiation of function template specialization 'boost::archive::save<boost::archive::binary_oarchive, const boost::serialization::nvp<GatingSet> >' requested here
archive::save(* this->This(), t);
^
/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/archive/basic_binary_oarchive.hpp:81:37: note: in instantiation of function template specialization 'boost::archive::detail::common_oarchive<boost::archive::binary_oarchive>::save_override<const boost::serialization::nvp<GatingSet> >' requested here
this->detail_common_oarchive::save_override(t, static_cast<int>(version));
^
/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/archive/binary_oarchive_impl.hpp:63:47: note: in instantiation of function template specialization 'boost::archive::basic_binary_oarchive<boost::archive::binary_oarchive>::save_override<boost::serialization::nvp<GatingSet> >' requested here
this->basic_binary_oarchive<Archive>::save_override(t, 0L);
^
/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/archive/detail/interface_oarchive.hpp:63:23: note: in instantiation of function template specialization 'boost::archive::binary_oarchive_impl<boost::archive::binary_oarchive, char, std::__1::char_traits<char> >::save_override<const boost::serialization::nvp<GatingSet> >' requested here
this->This()->save_override(t, 0);
^
GatingSet.cpp:42:9: note: in instantiation of function template specialization 'boost::archive::detail::interface_oarchive<boost::archive::binary_oarchive>::operator<<<const boost::serialization::nvp<GatingSet> >' requested here
oa << BOOST_SERIALIZATION_NVP(*this);
^
In file included from GatingSet.cpp:9:
In file included from ./include/GatingSet.hpp:12:
In file included from ./include/GatingHierarchy.hpp:13:
In file included from ./include/populationTree.hpp:11:
In file included from ./include/nodeProperties.hpp:11:
In file included from ./include/POPINDICES.hpp:15:
In file included from ./include/gate.hpp:14:
In file included from ./include/flowData.hpp:24:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/archive/text_iarchive.hpp:24:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/archive/basic_text_iarchive.hpp:31:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/archive/detail/common_iarchive.hpp:23:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/archive/detail/interface_iarchive.hpp:22:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/archive/detail/iserializer.hpp:46:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/serialization/extended_type_info_typeid.hpp:37:
/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/serialization/access.hpp:125:9: warning: delete called on 'trans_local' that has virtual functions but non-virtual destructor [-Wdelete-non-virtual-dtor]
delete const_cast<T *>(t);
^
/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/serialization/extended_type_info_typeid.hpp:133:39: note: in instantiation of function template specialization 'boost::serialization::access::destroy<trans_local>' requested here
boost::serialization::access::destroy(
^
/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/serialization/singleton.hpp:106:7: note: in instantiation of member function 'boost::serialization::extended_type_info_typeid<trans_local>::destroy' requested here
class singleton_wrapper : public T
^
/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/serialization/singleton.hpp:141:16: note: in instantiation of member function 'boost::serialization::singleton<boost::serialization::extended_type_info_typeid<trans_local> >::get_instance' requested here
return get_instance();
^
/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/serialization/void_cast.hpp:183:49: note: in instantiation of member function 'boost::serialization::singleton<boost::serialization::extended_type_info_typeid<trans_local> >::get_const_instance' requested here
& type_info_implementation<Base>::type::get_const_instance(),
^
/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/serialization/singleton.hpp:106:7: note: in instantiation of member function 'boost::serialization::void_cast_detail::void_caster_primitive<trans_global, trans_local>::void_caster_primitive' requested here
class singleton_wrapper : public T
^
/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/serialization/singleton.hpp:141:16: note: (skipping 97 contexts in backtrace; use -ftemplate-backtrace-limit=0 to see all)
return get_instance();
^
/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/archive/detail/common_oarchive.hpp:69:18: note: in instantiation of function template specialization 'boost::archive::save<boost::archive::binary_oarchive, const boost::serialization::nvp<GatingSet> >' requested here
archive::save(* this->This(), t);
^
/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/archive/basic_binary_oarchive.hpp:81:37: note: in instantiation of function template specialization 'boost::archive::detail::common_oarchive<boost::archive::binary_oarchive>::save_override<const boost::serialization::nvp<GatingSet> >' requested here
this->detail_common_oarchive::save_override(t, static_cast<int>(version));
^
/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/archive/binary_oarchive_impl.hpp:63:47: note: in instantiation of function template specialization 'boost::archive::basic_binary_oarchive<boost::archive::binary_oarchive>::save_override<boost::serialization::nvp<GatingSet> >' requested here
this->basic_binary_oarchive<Archive>::save_override(t, 0L);
^
/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/archive/detail/interface_oarchive.hpp:63:23: note: in instantiation of function template specialization 'boost::archive::binary_oarchive_impl<boost::archive::binary_oarchive, char, std::__1::char_traits<char> >::save_override<const boost::serialization::nvp<GatingSet> >' requested here
this->This()->save_override(t, 0);
^
GatingSet.cpp:42:9: note: in instantiation of function template specialization 'boost::archive::detail::interface_oarchive<boost::archive::binary_oarchive>::operator<<<const boost::serialization::nvp<GatingSet> >' requested here
oa << BOOST_SERIALIZATION_NVP(*this);
^
3 warnings generated.
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -DROUT -I/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.10.sdk/usr/include/libxml2 -Iprotobuf-2.6.0/src -ftemplate-depth=900 -Iboost_serialization -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include" -fPIC -Wall -mtune=core2 -g -O2 -c GatingSet.pb.cc -o GatingSet.pb.o
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -DROUT -I/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.10.sdk/usr/include/libxml2 -Iprotobuf-2.6.0/src -ftemplate-depth=900 -Iboost_serialization -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include" -fPIC -Wall -mtune=core2 -g -O2 -c POPINDICES.cpp -o POPINDICES.o
In file included from POPINDICES.cpp:8:
In file included from ./include/POPINDICES.hpp:15:
In file included from ./include/gate.hpp:14:
In file included from ./include/flowData.hpp:24:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/archive/text_iarchive.hpp:24:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/archive/basic_text_iarchive.hpp:31:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/archive/detail/common_iarchive.hpp:23:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/archive/detail/interface_iarchive.hpp:22:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/archive/detail/iserializer.hpp:46:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/serialization/extended_type_info_typeid.hpp:27:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/serialization/static_warning.hpp:73:
/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/mpl/print.hpp:50:19: warning: in-class initialization of non-static data member is a C++11 extension [-Wc++11-extensions]
const int m_x = 1 / (sizeof(T) - sizeof(T));
^
1 warning generated.
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -DROUT -I/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.10.sdk/usr/include/libxml2 -Iprotobuf-2.6.0/src -ftemplate-depth=900 -Iboost_serialization -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include" -fPIC -Wall -mtune=core2 -g -O2 -c R_API.cpp -o R_API.o
In file included from R_API.cpp:9:
In file included from ./include/R_GatingSet.hpp:15:
In file included from ./include/GatingSet.hpp:12:
In file included from ./include/GatingHierarchy.hpp:13:
In file included from ./include/populationTree.hpp:11:
In file included from ./include/nodeProperties.hpp:11:
In file included from ./include/POPINDICES.hpp:15:
In file included from ./include/gate.hpp:14:
In file included from ./include/flowData.hpp:24:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/archive/text_iarchive.hpp:24:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/archive/basic_text_iarchive.hpp:31:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/archive/detail/common_iarchive.hpp:23:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/archive/detail/interface_iarchive.hpp:22:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/archive/detail/iserializer.hpp:46:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/serialization/extended_type_info_typeid.hpp:27:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/serialization/static_warning.hpp:73:
/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/mpl/print.hpp:50:19: warning: in-class initialization of non-static data member is a C++11 extension [-Wc++11-extensions]
const int m_x = 1 / (sizeof(T) - sizeof(T));
^
1 warning generated.
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -DROUT -I/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.10.sdk/usr/include/libxml2 -Iprotobuf-2.6.0/src -ftemplate-depth=900 -Iboost_serialization -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include" -fPIC -Wall -mtune=core2 -g -O2 -c R_GatingHierarchy.cpp -o R_GatingHierarchy.o
In file included from R_GatingHierarchy.cpp:17:
In file included from ./include/R_GatingHierarchy.hpp:12:
In file included from ./include/GatingHierarchy.hpp:13:
In file included from ./include/populationTree.hpp:11:
In file included from ./include/nodeProperties.hpp:11:
In file included from ./include/POPINDICES.hpp:15:
In file included from ./include/gate.hpp:14:
In file included from ./include/flowData.hpp:24:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/archive/text_iarchive.hpp:24:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/archive/basic_text_iarchive.hpp:31:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/archive/detail/common_iarchive.hpp:23:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/archive/detail/interface_iarchive.hpp:22:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/archive/detail/iserializer.hpp:46:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/serialization/extended_type_info_typeid.hpp:27:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/serialization/static_warning.hpp:73:
/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/mpl/print.hpp:50:19: warning: in-class initialization of non-static data member is a C++11 extension [-Wc++11-extensions]
const int m_x = 1 / (sizeof(T) - sizeof(T));
^
R_GatingHierarchy.cpp:387:6: warning: comparison of unsigned expression < 0 is always false [-Wtautological-compare]
if(u<0)
˜^˜
R_GatingHierarchy.cpp:512:6: warning: comparison of unsigned expression < 0 is always false [-Wtautological-compare]
if(u<0)throw(domain_error("not valid vertexID!"));
˜^˜
R_GatingHierarchy.cpp:552:6: warning: comparison of unsigned expression < 0 is always false [-Wtautological-compare]
if(u<0)throw(domain_error("not valid vertexID!"));
˜^˜
R_GatingHierarchy.cpp:568:6: warning: comparison of unsigned expression < 0 is always false [-Wtautological-compare]
if(u<0)throw(domain_error("not valid vertexID!"));
˜^˜
5 warnings generated.
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -DROUT -I/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.10.sdk/usr/include/libxml2 -Iprotobuf-2.6.0/src -ftemplate-depth=900 -Iboost_serialization -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include" -fPIC -Wall -mtune=core2 -g -O2 -c R_GatingSet.cpp -o R_GatingSet.o
In file included from R_GatingSet.cpp:9:
In file included from ./include/R_GatingSet.hpp:15:
In file included from ./include/GatingSet.hpp:12:
In file included from ./include/GatingHierarchy.hpp:13:
In file included from ./include/populationTree.hpp:11:
In file included from ./include/nodeProperties.hpp:11:
In file included from ./include/POPINDICES.hpp:15:
In file included from ./include/gate.hpp:14:
In file included from ./include/flowData.hpp:24:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/archive/text_iarchive.hpp:24:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/archive/basic_text_iarchive.hpp:31:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/archive/detail/common_iarchive.hpp:23:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/archive/detail/interface_iarchive.hpp:22:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/archive/detail/iserializer.hpp:46:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/serialization/extended_type_info_typeid.hpp:27:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/serialization/static_warning.hpp:73:
/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/mpl/print.hpp:50:19: warning: in-class initialization of non-static data member is a C++11 extension [-Wc++11-extensions]
const int m_x = 1 / (sizeof(T) - sizeof(T));
^
1 warning generated.
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -DROUT -I/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.10.sdk/usr/include/libxml2 -Iprotobuf-2.6.0/src -ftemplate-depth=900 -Iboost_serialization -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include" -fPIC -Wall -mtune=core2 -g -O2 -c RcppExports.cpp -o RcppExports.o
In file included from RcppExports.cpp:4:
In file included from ./../inst/include/flowWorkspace.h:5:
In file included from ./../inst/include/../../src/include/GatingSet.hpp:12:
In file included from ./../inst/include/../../src/include/GatingHierarchy.hpp:13:
In file included from ./../inst/include/../../src/include/populationTree.hpp:11:
In file included from ./../inst/include/../../src/include/nodeProperties.hpp:11:
In file included from ./../inst/include/../../src/include/POPINDICES.hpp:15:
In file included from ./../inst/include/../../src/include/gate.hpp:14:
In file included from ./../inst/include/../../src/include/flowData.hpp:24:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/archive/text_iarchive.hpp:24:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/archive/basic_text_iarchive.hpp:31:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/archive/detail/common_iarchive.hpp:23:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/archive/detail/interface_iarchive.hpp:22:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/archive/detail/iserializer.hpp:46:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/serialization/extended_type_info_typeid.hpp:27:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/serialization/static_warning.hpp:73:
/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/mpl/print.hpp:50:19: warning: in-class initialization of non-static data member is a C++11 extension [-Wc++11-extensions]
const int m_x = 1 / (sizeof(T) - sizeof(T));
^
1 warning generated.
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -DROUT -I/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.10.sdk/usr/include/libxml2 -Iprotobuf-2.6.0/src -ftemplate-depth=900 -Iboost_serialization -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include" -fPIC -Wall -mtune=core2 -g -O2 -c calibrationTable.cpp -o calibrationTable.o
In file included from calibrationTable.cpp:8:
In file included from ./include/calibrationTable.hpp:18:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/archive/binary_iarchive.hpp:20:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/archive/binary_iarchive_impl.hpp:22:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/archive/basic_binary_iarchive.hpp:31:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/archive/detail/common_iarchive.hpp:23:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/archive/detail/interface_iarchive.hpp:22:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/archive/detail/iserializer.hpp:46:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/serialization/extended_type_info_typeid.hpp:27:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/serialization/static_warning.hpp:73:
/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/mpl/print.hpp:50:19: warning: in-class initialization of non-static data member is a C++11 extension [-Wc++11-extensions]
const int m_x = 1 / (sizeof(T) - sizeof(T));
^
1 warning generated.
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -DROUT -I/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.10.sdk/usr/include/libxml2 -Iprotobuf-2.6.0/src -ftemplate-depth=900 -Iboost_serialization -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include" -fPIC -Wall -mtune=core2 -g -O2 -c delimitedMessage.cpp -o delimitedMessage.o
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -DROUT -I/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.10.sdk/usr/include/libxml2 -Iprotobuf-2.6.0/src -ftemplate-depth=900 -Iboost_serialization -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include" -fPIC -Wall -mtune=core2 -g -O2 -c flowData.cpp -o flowData.o
In file included from flowData.cpp:8:
In file included from ./include/flowData.hpp:24:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/archive/text_iarchive.hpp:24:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/archive/basic_text_iarchive.hpp:31:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/archive/detail/common_iarchive.hpp:23:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/archive/detail/interface_iarchive.hpp:22:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/archive/detail/iserializer.hpp:46:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/serialization/extended_type_info_typeid.hpp:27:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/serialization/static_warning.hpp:73:
/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/mpl/print.hpp:50:19: warning: in-class initialization of non-static data member is a C++11 extension [-Wc++11-extensions]
const int m_x = 1 / (sizeof(T) - sizeof(T));
^
1 warning generated.
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -DROUT -I/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.10.sdk/usr/include/libxml2 -Iprotobuf-2.6.0/src -ftemplate-depth=900 -Iboost_serialization -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include" -fPIC -Wall -mtune=core2 -g -O2 -c flowJoWorkspace.cpp -o flowJoWorkspace.o
In file included from flowJoWorkspace.cpp:7:
In file included from ./include/flowJoWorkspace.hpp:11:
In file included from ./include/workspace.hpp:14:
In file included from ./include/wsNode.hpp:10:
In file included from ./include/nodeProperties.hpp:11:
In file included from ./include/POPINDICES.hpp:15:
In file included from ./include/gate.hpp:14:
In file included from ./include/flowData.hpp:24:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/archive/text_iarchive.hpp:24:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/archive/basic_text_iarchive.hpp:31:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/archive/detail/common_iarchive.hpp:23:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/archive/detail/interface_iarchive.hpp:22:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/archive/detail/iserializer.hpp:46:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/serialization/extended_type_info_typeid.hpp:27:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/serialization/static_warning.hpp:73:
/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/mpl/print.hpp:50:19: warning: in-class initialization of non-static data member is a C++11 extension [-Wc++11-extensions]
const int m_x = 1 / (sizeof(T) - sizeof(T));
^
1 warning generated.
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -DROUT -I/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.10.sdk/usr/include/libxml2 -Iprotobuf-2.6.0/src -ftemplate-depth=900 -Iboost_serialization -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include" -fPIC -Wall -mtune=core2 -g -O2 -c gate.cpp -o gate.o
In file included from gate.cpp:10:
In file included from ./include/gate.hpp:14:
In file included from ./include/flowData.hpp:24:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/archive/text_iarchive.hpp:24:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/archive/basic_text_iarchive.hpp:31:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/archive/detail/common_iarchive.hpp:23:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/archive/detail/interface_iarchive.hpp:22:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/archive/detail/iserializer.hpp:46:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/serialization/extended_type_info_typeid.hpp:27:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/serialization/static_warning.hpp:73:
/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/mpl/print.hpp:50:19: warning: in-class initialization of non-static data member is a C++11 extension [-Wc++11-extensions]
const int m_x = 1 / (sizeof(T) - sizeof(T));
^
1 warning generated.
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -DROUT -I/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.10.sdk/usr/include/libxml2 -Iprotobuf-2.6.0/src -ftemplate-depth=900 -Iboost_serialization -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include" -fPIC -Wall -mtune=core2 -g -O2 -c global.cpp -o global.o
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -DROUT -I/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.10.sdk/usr/include/libxml2 -Iprotobuf-2.6.0/src -ftemplate-depth=900 -Iboost_serialization -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include" -fPIC -Wall -mtune=core2 -g -O2 -c macFlowJoWorkspace.cpp -o macFlowJoWorkspace.o
In file included from macFlowJoWorkspace.cpp:9:
In file included from ./include/macFlowJoWorkspace.hpp:10:
In file included from ./include/flowJoWorkspace.hpp:11:
In file included from ./include/workspace.hpp:14:
In file included from ./include/wsNode.hpp:10:
In file included from ./include/nodeProperties.hpp:11:
In file included from ./include/POPINDICES.hpp:15:
In file included from ./include/gate.hpp:14:
In file included from ./include/flowData.hpp:24:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/archive/text_iarchive.hpp:24:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/archive/basic_text_iarchive.hpp:31:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/archive/detail/common_iarchive.hpp:23:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/archive/detail/interface_iarchive.hpp:22:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/archive/detail/iserializer.hpp:46:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/serialization/extended_type_info_typeid.hpp:27:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/serialization/static_warning.hpp:73:
/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/mpl/print.hpp:50:19: warning: in-class initialization of non-static data member is a C++11 extension [-Wc++11-extensions]
const int m_x = 1 / (sizeof(T) - sizeof(T));
^
1 warning generated.
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -DROUT -I/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.10.sdk/usr/include/libxml2 -Iprotobuf-2.6.0/src -ftemplate-depth=900 -Iboost_serialization -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include" -fPIC -Wall -mtune=core2 -g -O2 -c nodeProperties.cpp -o nodeProperties.o
In file included from nodeProperties.cpp:7:
In file included from ./include/nodeProperties.hpp:11:
In file included from ./include/POPINDICES.hpp:15:
In file included from ./include/gate.hpp:14:
In file included from ./include/flowData.hpp:24:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/archive/text_iarchive.hpp:24:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/archive/basic_text_iarchive.hpp:31:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/archive/detail/common_iarchive.hpp:23:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/archive/detail/interface_iarchive.hpp:22:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/archive/detail/iserializer.hpp:46:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/serialization/extended_type_info_typeid.hpp:27:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/serialization/static_warning.hpp:73:
/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/mpl/print.hpp:50:19: warning: in-class initialization of non-static data member is a C++11 extension [-Wc++11-extensions]
const int m_x = 1 / (sizeof(T) - sizeof(T));
^
1 warning generated.
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -DROUT -I/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.10.sdk/usr/include/libxml2 -Iprotobuf-2.6.0/src -ftemplate-depth=900 -Iboost_serialization -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include" -fPIC -Wall -mtune=core2 -g -O2 -c spline.cpp -o spline.o
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -DROUT -I/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.10.sdk/usr/include/libxml2 -Iprotobuf-2.6.0/src -ftemplate-depth=900 -Iboost_serialization -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include" -fPIC -Wall -mtune=core2 -g -O2 -c transformation.cpp -o transformation.o
In file included from transformation.cpp:8:
In file included from ./include/transformation.hpp:23:
In file included from ./include/calibrationTable.hpp:18:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/archive/binary_iarchive.hpp:20:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/archive/binary_iarchive_impl.hpp:22:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/archive/basic_binary_iarchive.hpp:31:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/archive/detail/common_iarchive.hpp:23:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/archive/detail/interface_iarchive.hpp:22:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/archive/detail/iserializer.hpp:46:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/serialization/extended_type_info_typeid.hpp:27:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/serialization/static_warning.hpp:73:
/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/mpl/print.hpp:50:19: warning: in-class initialization of non-static data member is a C++11 extension [-Wc++11-extensions]
const int m_x = 1 / (sizeof(T) - sizeof(T));
^
transformation.cpp:236:57: warning: field 'length' will be initialized after field 'maxRange' [-Wreorder]
fasinhTrans::fasinhTrans():transformation(false,FASINH),length(256),maxRange(262144), T(262144),A(0),M(4.5){
^
transformation.cpp:240:123: warning: field 'length' will be initialized after field 'maxRange' [-Wreorder]
fasinhTrans::fasinhTrans(double _length, double _maxRange, double _T, double _A, double _M):transformation(false, FASINH),length(_length),maxRange(_maxRange), T(_T),A(_A),M(_M){
^
3 warnings generated.
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -DROUT -I/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.10.sdk/usr/include/libxml2 -Iprotobuf-2.6.0/src -ftemplate-depth=900 -Iboost_serialization -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include" -fPIC -Wall -mtune=core2 -g -O2 -c winFlowJoWorkspace.cpp -o winFlowJoWorkspace.o
In file included from winFlowJoWorkspace.cpp:8:
In file included from ./include/winFlowJoWorkspace.hpp:10:
In file included from ./include/flowJoWorkspace.hpp:11:
In file included from ./include/workspace.hpp:14:
In file included from ./include/wsNode.hpp:10:
In file included from ./include/nodeProperties.hpp:11:
In file included from ./include/POPINDICES.hpp:15:
In file included from ./include/gate.hpp:14:
In file included from ./include/flowData.hpp:24:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/archive/text_iarchive.hpp:24:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/archive/basic_text_iarchive.hpp:31:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/archive/detail/common_iarchive.hpp:23:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/archive/detail/interface_iarchive.hpp:22:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/archive/detail/iserializer.hpp:46:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/serialization/extended_type_info_typeid.hpp:27:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/serialization/static_warning.hpp:73:
/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/mpl/print.hpp:50:19: warning: in-class initialization of non-static data member is a C++11 extension [-Wc++11-extensions]
const int m_x = 1 / (sizeof(T) - sizeof(T));
^
winFlowJoWorkspace.cpp:494:27: warning: '/*' within block comment [-Wcomment]
* "*[local-name()='edge']/*[local-name()='vertex']" is for ellipsoidGate
^
2 warnings generated.
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -DROUT -I/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.10.sdk/usr/include/libxml2 -Iprotobuf-2.6.0/src -ftemplate-depth=900 -Iboost_serialization -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include" -fPIC -Wall -mtune=core2 -g -O2 -c workspace.cpp -o workspace.o
In file included from workspace.cpp:11:
In file included from ./include/workspace.hpp:14:
In file included from ./include/wsNode.hpp:10:
In file included from ./include/nodeProperties.hpp:11:
In file included from ./include/POPINDICES.hpp:15:
In file included from ./include/gate.hpp:14:
In file included from ./include/flowData.hpp:24:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/archive/text_iarchive.hpp:24:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/archive/basic_text_iarchive.hpp:31:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/archive/detail/common_iarchive.hpp:23:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/archive/detail/interface_iarchive.hpp:22:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/archive/detail/iserializer.hpp:46:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/serialization/extended_type_info_typeid.hpp:27:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/serialization/static_warning.hpp:73:
/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/mpl/print.hpp:50:19: warning: in-class initialization of non-static data member is a C++11 extension [-Wc++11-extensions]
const int m_x = 1 / (sizeof(T) - sizeof(T));
^
1 warning generated.
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -DROUT -I/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.10.sdk/usr/include/libxml2 -Iprotobuf-2.6.0/src -ftemplate-depth=900 -Iboost_serialization -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include" -fPIC -Wall -mtune=core2 -g -O2 -c wsNode.cpp -o wsNode.o
In file included from wsNode.cpp:10:
In file included from ./include/wsNode.hpp:10:
In file included from ./include/nodeProperties.hpp:11:
In file included from ./include/POPINDICES.hpp:15:
In file included from ./include/gate.hpp:14:
In file included from ./include/flowData.hpp:24:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/archive/text_iarchive.hpp:24:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/archive/basic_text_iarchive.hpp:31:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/archive/detail/common_iarchive.hpp:23:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/archive/detail/interface_iarchive.hpp:22:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/archive/detail/iserializer.hpp:46:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/serialization/extended_type_info_typeid.hpp:27:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/serialization/static_warning.hpp:73:
/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/mpl/print.hpp:50:19: warning: in-class initialization of non-static data member is a C++11 extension [-Wc++11-extensions]
const int m_x = 1 / (sizeof(T) - sizeof(T));
^
1 warning generated.
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -DROUT -I/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.10.sdk/usr/include/libxml2 -Iprotobuf-2.6.0/src -ftemplate-depth=900 -Iboost_serialization -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include" -fPIC -Wall -mtune=core2 -g -O2 -c boost_serialization/archive_exception.cpp -o boost_serialization/archive_exception.o
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -DROUT -I/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.10.sdk/usr/include/libxml2 -Iprotobuf-2.6.0/src -ftemplate-depth=900 -Iboost_serialization -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include" -fPIC -Wall -mtune=core2 -g -O2 -c boost_serialization/basic_archive.cpp -o boost_serialization/basic_archive.o
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -DROUT -I/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.10.sdk/usr/include/libxml2 -Iprotobuf-2.6.0/src -ftemplate-depth=900 -Iboost_serialization -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include" -fPIC -Wall -mtune=core2 -g -O2 -c boost_serialization/basic_iarchive.cpp -o boost_serialization/basic_iarchive.o
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -DROUT -I/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.10.sdk/usr/include/libxml2 -Iprotobuf-2.6.0/src -ftemplate-depth=900 -Iboost_serialization -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include" -fPIC -Wall -mtune=core2 -g -O2 -c boost_serialization/basic_iserializer.cpp -o boost_serialization/basic_iserializer.o
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -DROUT -I/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.10.sdk/usr/include/libxml2 -Iprotobuf-2.6.0/src -ftemplate-depth=900 -Iboost_serialization -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include" -fPIC -Wall -mtune=core2 -g -O2 -c boost_serialization/basic_oarchive.cpp -o boost_serialization/basic_oarchive.o
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -DROUT -I/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.10.sdk/usr/include/libxml2 -Iprotobuf-2.6.0/src -ftemplate-depth=900 -Iboost_serialization -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include" -fPIC -Wall -mtune=core2 -g -O2 -c boost_serialization/basic_oserializer.cpp -o boost_serialization/basic_oserializer.o
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -DROUT -I/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.10.sdk/usr/include/libxml2 -Iprotobuf-2.6.0/src -ftemplate-depth=900 -Iboost_serialization -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include" -fPIC -Wall -mtune=core2 -g -O2 -c boost_serialization/basic_pointer_iserializer.cpp -o boost_serialization/basic_pointer_iserializer.o
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -DROUT -I/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.10.sdk/usr/include/libxml2 -Iprotobuf-2.6.0/src -ftemplate-depth=900 -Iboost_serialization -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include" -fPIC -Wall -mtune=core2 -g -O2 -c boost_serialization/basic_pointer_oserializer.cpp -o boost_serialization/basic_pointer_oserializer.o
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -DROUT -I/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.10.sdk/usr/include/libxml2 -Iprotobuf-2.6.0/src -ftemplate-depth=900 -Iboost_serialization -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include" -fPIC -Wall -mtune=core2 -g -O2 -c boost_serialization/basic_serializer_map.cpp -o boost_serialization/basic_serializer_map.o
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -DROUT -I/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.10.sdk/usr/include/libxml2 -Iprotobuf-2.6.0/src -ftemplate-depth=900 -Iboost_serialization -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include" -fPIC -Wall -mtune=core2 -g -O2 -c boost_serialization/basic_text_iprimitive.cpp -o boost_serialization/basic_text_iprimitive.o
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -DROUT -I/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.10.sdk/usr/include/libxml2 -Iprotobuf-2.6.0/src -ftemplate-depth=900 -Iboost_serialization -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include" -fPIC -Wall -mtune=core2 -g -O2 -c boost_serialization/basic_text_oprimitive.cpp -o boost_serialization/basic_text_oprimitive.o
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -DROUT -I/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.10.sdk/usr/include/libxml2 -Iprotobuf-2.6.0/src -ftemplate-depth=900 -Iboost_serialization -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include" -fPIC -Wall -mtune=core2 -g -O2 -c boost_serialization/basic_text_wiprimitive.cpp -o boost_serialization/basic_text_wiprimitive.o
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -DROUT -I/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.10.sdk/usr/include/libxml2 -Iprotobuf-2.6.0/src -ftemplate-depth=900 -Iboost_serialization -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include" -fPIC -Wall -mtune=core2 -g -O2 -c boost_serialization/basic_text_woprimitive.cpp -o boost_serialization/basic_text_woprimitive.o
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -DROUT -I/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.10.sdk/usr/include/libxml2 -Iprotobuf-2.6.0/src -ftemplate-depth=900 -Iboost_serialization -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include" -fPIC -Wall -mtune=core2 -g -O2 -c boost_serialization/basic_xml_archive.cpp -o boost_serialization/basic_xml_archive.o
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -DROUT -I/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.10.sdk/usr/include/libxml2 -Iprotobuf-2.6.0/src -ftemplate-depth=900 -Iboost_serialization -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include" -fPIC -Wall -mtune=core2 -g -O2 -c boost_serialization/binary_iarchive.cpp -o boost_serialization/binary_iarchive.o
In file included from boost_serialization/binary_iarchive.cpp:14:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/archive/binary_iarchive.hpp:20:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/archive/binary_iarchive_impl.hpp:22:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/archive/basic_binary_iarchive.hpp:31:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/archive/detail/common_iarchive.hpp:23:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/archive/detail/interface_iarchive.hpp:22:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/archive/detail/iserializer.hpp:46:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/serialization/extended_type_info_typeid.hpp:27:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/serialization/static_warning.hpp:73:
/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/mpl/print.hpp:50:19: warning: in-class initialization of non-static data member is a C++11 extension [-Wc++11-extensions]
const int m_x = 1 / (sizeof(T) - sizeof(T));
^
1 warning generated.
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -DROUT -I/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.10.sdk/usr/include/libxml2 -Iprotobuf-2.6.0/src -ftemplate-depth=900 -Iboost_serialization -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include" -fPIC -Wall -mtune=core2 -g -O2 -c boost_serialization/binary_oarchive.cpp -o boost_serialization/binary_oarchive.o
In file included from boost_serialization/binary_oarchive.cpp:14:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/archive/binary_oarchive.hpp:21:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/archive/binary_oarchive_impl.hpp:23:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/archive/basic_binary_oarchive.hpp:34:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/archive/detail/common_oarchive.hpp:22:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/archive/detail/interface_oarchive.hpp:23:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/archive/detail/oserializer.hpp:38:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/serialization/extended_type_info_typeid.hpp:27:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/serialization/static_warning.hpp:73:
/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/mpl/print.hpp:50:19: warning: in-class initialization of non-static data member is a C++11 extension [-Wc++11-extensions]
const int m_x = 1 / (sizeof(T) - sizeof(T));
^
1 warning generated.
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -DROUT -I/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.10.sdk/usr/include/libxml2 -Iprotobuf-2.6.0/src -ftemplate-depth=900 -Iboost_serialization -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include" -fPIC -Wall -mtune=core2 -g -O2 -c boost_serialization/binary_wiarchive.cpp -o boost_serialization/binary_wiarchive.o
In file included from boost_serialization/binary_wiarchive.cpp:18:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/archive/binary_wiarchive.hpp:25:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/archive/binary_iarchive_impl.hpp:22:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/archive/basic_binary_iarchive.hpp:31:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/archive/detail/common_iarchive.hpp:23:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/archive/detail/interface_iarchive.hpp:22:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/archive/detail/iserializer.hpp:46:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/serialization/extended_type_info_typeid.hpp:27:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/serialization/static_warning.hpp:73:
/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/mpl/print.hpp:50:19: warning: in-class initialization of non-static data member is a C++11 extension [-Wc++11-extensions]
const int m_x = 1 / (sizeof(T) - sizeof(T));
^
1 warning generated.
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -DROUT -I/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.10.sdk/usr/include/libxml2 -Iprotobuf-2.6.0/src -ftemplate-depth=900 -Iboost_serialization -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include" -fPIC -Wall -mtune=core2 -g -O2 -c boost_serialization/binary_woarchive.cpp -o boost_serialization/binary_woarchive.o
In file included from boost_serialization/binary_woarchive.cpp:18:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/archive/binary_woarchive.hpp:25:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/archive/binary_oarchive_impl.hpp:23:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/archive/basic_binary_oarchive.hpp:34:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/archive/detail/common_oarchive.hpp:22:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/archive/detail/interface_oarchive.hpp:23:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/archive/detail/oserializer.hpp:38:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/serialization/extended_type_info_typeid.hpp:27:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/serialization/static_warning.hpp:73:
/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/mpl/print.hpp:50:19: warning: in-class initialization of non-static data member is a C++11 extension [-Wc++11-extensions]
const int m_x = 1 / (sizeof(T) - sizeof(T));
^
1 warning generated.
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -DROUT -I/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.10.sdk/usr/include/libxml2 -Iprotobuf-2.6.0/src -ftemplate-depth=900 -Iboost_serialization -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include" -fPIC -Wall -mtune=core2 -g -O2 -c boost_serialization/codecvt_null.cpp -o boost_serialization/codecvt_null.o
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -DROUT -I/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.10.sdk/usr/include/libxml2 -Iprotobuf-2.6.0/src -ftemplate-depth=900 -Iboost_serialization -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include" -fPIC -Wall -mtune=core2 -g -O2 -c boost_serialization/extended_type_info.cpp -o boost_serialization/extended_type_info.o
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -DROUT -I/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.10.sdk/usr/include/libxml2 -Iprotobuf-2.6.0/src -ftemplate-depth=900 -Iboost_serialization -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include" -fPIC -Wall -mtune=core2 -g -O2 -c boost_serialization/extended_type_info_no_rtti.cpp -o boost_serialization/extended_type_info_no_rtti.o
In file included from boost_serialization/extended_type_info_no_rtti.cpp:22:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/serialization/extended_type_info_no_rtti.hpp:29:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/serialization/static_warning.hpp:73:
/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/mpl/print.hpp:50:19: warning: in-class initialization of non-static data member is a C++11 extension [-Wc++11-extensions]
const int m_x = 1 / (sizeof(T) - sizeof(T));
^
1 warning generated.
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -DROUT -I/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.10.sdk/usr/include/libxml2 -Iprotobuf-2.6.0/src -ftemplate-depth=900 -Iboost_serialization -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include" -fPIC -Wall -mtune=core2 -g -O2 -c boost_serialization/extended_type_info_typeid.cpp -o boost_serialization/extended_type_info_typeid.o
In file included from boost_serialization/extended_type_info_typeid.cpp:23:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/serialization/extended_type_info_typeid.hpp:27:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/serialization/static_warning.hpp:73:
/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/mpl/print.hpp:50:19: warning: in-class initialization of non-static data member is a C++11 extension [-Wc++11-extensions]
const int m_x = 1 / (sizeof(T) - sizeof(T));
^
1 warning generated.
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -DROUT -I/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.10.sdk/usr/include/libxml2 -Iprotobuf-2.6.0/src -ftemplate-depth=900 -Iboost_serialization -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include" -fPIC -Wall -mtune=core2 -g -O2 -c boost_serialization/polymorphic_iarchive.cpp -o boost_serialization/polymorphic_iarchive.o
In file included from boost_serialization/polymorphic_iarchive.cpp:19:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/archive/polymorphic_iarchive.hpp:33:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/archive/detail/iserializer.hpp:46:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/serialization/extended_type_info_typeid.hpp:27:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/serialization/static_warning.hpp:73:
/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/mpl/print.hpp:50:19: warning: in-class initialization of non-static data member is a C++11 extension [-Wc++11-extensions]
const int m_x = 1 / (sizeof(T) - sizeof(T));
^
1 warning generated.
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -DROUT -I/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.10.sdk/usr/include/libxml2 -Iprotobuf-2.6.0/src -ftemplate-depth=900 -Iboost_serialization -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include" -fPIC -Wall -mtune=core2 -g -O2 -c boost_serialization/polymorphic_oarchive.cpp -o boost_serialization/polymorphic_oarchive.o
In file included from boost_serialization/polymorphic_oarchive.cpp:19:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/archive/polymorphic_oarchive.hpp:32:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/archive/detail/oserializer.hpp:38:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/serialization/extended_type_info_typeid.hpp:27:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/serialization/static_warning.hpp:73:
/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/mpl/print.hpp:50:19: warning: in-class initialization of non-static data member is a C++11 extension [-Wc++11-extensions]
const int m_x = 1 / (sizeof(T) - sizeof(T));
^
1 warning generated.
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -DROUT -I/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.10.sdk/usr/include/libxml2 -Iprotobuf-2.6.0/src -ftemplate-depth=900 -Iboost_serialization -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include" -fPIC -Wall -mtune=core2 -g -O2 -c boost_serialization/stl_port.cpp -o boost_serialization/stl_port.o
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -DROUT -I/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.10.sdk/usr/include/libxml2 -Iprotobuf-2.6.0/src -ftemplate-depth=900 -Iboost_serialization -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include" -fPIC -Wall -mtune=core2 -g -O2 -c boost_serialization/text_iarchive.cpp -o boost_serialization/text_iarchive.o
In file included from boost_serialization/text_iarchive.cpp:16:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/archive/text_iarchive.hpp:24:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/archive/basic_text_iarchive.hpp:31:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/archive/detail/common_iarchive.hpp:23:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/archive/detail/interface_iarchive.hpp:22:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/archive/detail/iserializer.hpp:46:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/serialization/extended_type_info_typeid.hpp:27:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/serialization/static_warning.hpp:73:
/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/mpl/print.hpp:50:19: warning: in-class initialization of non-static data member is a C++11 extension [-Wc++11-extensions]
const int m_x = 1 / (sizeof(T) - sizeof(T));
^
1 warning generated.
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -DROUT -I/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.10.sdk/usr/include/libxml2 -Iprotobuf-2.6.0/src -ftemplate-depth=900 -Iboost_serialization -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include" -fPIC -Wall -mtune=core2 -g -O2 -c boost_serialization/text_oarchive.cpp -o boost_serialization/text_oarchive.o
In file included from boost_serialization/text_oarchive.cpp:16:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/archive/text_oarchive.hpp:31:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/archive/basic_text_oarchive.hpp:30:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/archive/detail/common_oarchive.hpp:22:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/archive/detail/interface_oarchive.hpp:23:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/archive/detail/oserializer.hpp:38:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/serialization/extended_type_info_typeid.hpp:27:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/serialization/static_warning.hpp:73:
/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/mpl/print.hpp:50:19: warning: in-class initialization of non-static data member is a C++11 extension [-Wc++11-extensions]
const int m_x = 1 / (sizeof(T) - sizeof(T));
^
1 warning generated.
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -DROUT -I/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.10.sdk/usr/include/libxml2 -Iprotobuf-2.6.0/src -ftemplate-depth=900 -Iboost_serialization -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include" -fPIC -Wall -mtune=core2 -g -O2 -c boost_serialization/text_wiarchive.cpp -o boost_serialization/text_wiarchive.o
In file included from boost_serialization/text_wiarchive.cpp:18:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/archive/text_wiarchive.hpp:28:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/archive/basic_text_iarchive.hpp:31:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/archive/detail/common_iarchive.hpp:23:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/archive/detail/interface_iarchive.hpp:22:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/archive/detail/iserializer.hpp:46:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/serialization/extended_type_info_typeid.hpp:27:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/serialization/static_warning.hpp:73:
/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/mpl/print.hpp:50:19: warning: in-class initialization of non-static data member is a C++11 extension [-Wc++11-extensions]
const int m_x = 1 / (sizeof(T) - sizeof(T));
^
1 warning generated.
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -DROUT -I/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.10.sdk/usr/include/libxml2 -Iprotobuf-2.6.0/src -ftemplate-depth=900 -Iboost_serialization -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include" -fPIC -Wall -mtune=core2 -g -O2 -c boost_serialization/text_woarchive.cpp -o boost_serialization/text_woarchive.o
In file included from boost_serialization/text_woarchive.cpp:17:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/archive/text_woarchive.hpp:36:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/archive/basic_text_oarchive.hpp:30:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/archive/detail/common_oarchive.hpp:22:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/archive/detail/interface_oarchive.hpp:23:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/archive/detail/oserializer.hpp:38:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/serialization/extended_type_info_typeid.hpp:27:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/serialization/static_warning.hpp:73:
/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/mpl/print.hpp:50:19: warning: in-class initialization of non-static data member is a C++11 extension [-Wc++11-extensions]
const int m_x = 1 / (sizeof(T) - sizeof(T));
^
1 warning generated.
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -DROUT -I/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.10.sdk/usr/include/libxml2 -Iprotobuf-2.6.0/src -ftemplate-depth=900 -Iboost_serialization -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include" -fPIC -Wall -mtune=core2 -g -O2 -c boost_serialization/utf8_codecvt_facet.cpp -o boost_serialization/utf8_codecvt_facet.o
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -DROUT -I/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.10.sdk/usr/include/libxml2 -Iprotobuf-2.6.0/src -ftemplate-depth=900 -Iboost_serialization -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include" -fPIC -Wall -mtune=core2 -g -O2 -c boost_serialization/void_cast.cpp -o boost_serialization/void_cast.o
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -DROUT -I/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.10.sdk/usr/include/libxml2 -Iprotobuf-2.6.0/src -ftemplate-depth=900 -Iboost_serialization -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include" -fPIC -Wall -mtune=core2 -g -O2 -c boost_serialization/xml_archive_exception.cpp -o boost_serialization/xml_archive_exception.o
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -DROUT -I/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.10.sdk/usr/include/libxml2 -Iprotobuf-2.6.0/src -ftemplate-depth=900 -Iboost_serialization -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include" -fPIC -Wall -mtune=core2 -g -O2 -c boost_serialization/xml_grammar.cpp -o boost_serialization/xml_grammar.o
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -DROUT -I/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.10.sdk/usr/include/libxml2 -Iprotobuf-2.6.0/src -ftemplate-depth=900 -Iboost_serialization -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include" -fPIC -Wall -mtune=core2 -g -O2 -c boost_serialization/xml_iarchive.cpp -o boost_serialization/xml_iarchive.o
In file included from boost_serialization/xml_iarchive.cpp:26:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/archive/xml_iarchive.hpp:24:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/archive/basic_xml_iarchive.hpp:23:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/archive/detail/common_iarchive.hpp:23:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/archive/detail/interface_iarchive.hpp:22:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/archive/detail/iserializer.hpp:46:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/serialization/extended_type_info_typeid.hpp:27:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/serialization/static_warning.hpp:73:
/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/mpl/print.hpp:50:19: warning: in-class initialization of non-static data member is a C++11 extension [-Wc++11-extensions]
const int m_x = 1 / (sizeof(T) - sizeof(T));
^
1 warning generated.
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -DROUT -I/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.10.sdk/usr/include/libxml2 -Iprotobuf-2.6.0/src -ftemplate-depth=900 -Iboost_serialization -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include" -fPIC -Wall -mtune=core2 -g -O2 -c boost_serialization/xml_oarchive.cpp -o boost_serialization/xml_oarchive.o
In file included from boost_serialization/xml_oarchive.cpp:16:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/archive/xml_oarchive.hpp:31:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/archive/basic_xml_oarchive.hpp:24:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/archive/detail/common_oarchive.hpp:22:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/archive/detail/interface_oarchive.hpp:23:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/archive/detail/oserializer.hpp:38:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/serialization/extended_type_info_typeid.hpp:27:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/serialization/static_warning.hpp:73:
/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/mpl/print.hpp:50:19: warning: in-class initialization of non-static data member is a C++11 extension [-Wc++11-extensions]
const int m_x = 1 / (sizeof(T) - sizeof(T));
^
1 warning generated.
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -DROUT -I/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.10.sdk/usr/include/libxml2 -Iprotobuf-2.6.0/src -ftemplate-depth=900 -Iboost_serialization -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include" -fPIC -Wall -mtune=core2 -g -O2 -c boost_serialization/xml_wgrammar.cpp -o boost_serialization/xml_wgrammar.o
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -DROUT -I/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.10.sdk/usr/include/libxml2 -Iprotobuf-2.6.0/src -ftemplate-depth=900 -Iboost_serialization -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include" -fPIC -Wall -mtune=core2 -g -O2 -c boost_serialization/xml_wiarchive.cpp -o boost_serialization/xml_wiarchive.o
In file included from boost_serialization/xml_wiarchive.cpp:31:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/archive/xml_wiarchive.hpp:29:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/archive/basic_xml_iarchive.hpp:23:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/archive/detail/common_iarchive.hpp:23:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/archive/detail/interface_iarchive.hpp:22:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/archive/detail/iserializer.hpp:46:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/serialization/extended_type_info_typeid.hpp:27:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/serialization/static_warning.hpp:73:
/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/mpl/print.hpp:50:19: warning: in-class initialization of non-static data member is a C++11 extension [-Wc++11-extensions]
const int m_x = 1 / (sizeof(T) - sizeof(T));
^
1 warning generated.
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -DROUT -I/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.10.sdk/usr/include/libxml2 -Iprotobuf-2.6.0/src -ftemplate-depth=900 -Iboost_serialization -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include" -fPIC -Wall -mtune=core2 -g -O2 -c boost_serialization/xml_woarchive.cpp -o boost_serialization/xml_woarchive.o
In file included from boost_serialization/xml_woarchive.cpp:17:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/archive/xml_woarchive.hpp:36:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/archive/basic_xml_oarchive.hpp:24:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/archive/detail/common_oarchive.hpp:22:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/archive/detail/interface_oarchive.hpp:23:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/archive/detail/oserializer.hpp:38:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/serialization/extended_type_info_typeid.hpp:27:
In file included from /Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/serialization/static_warning.hpp:73:
/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include/boost/mpl/print.hpp:50:19: warning: in-class initialization of non-static data member is a C++11 extension [-Wc++11-extensions]
const int m_x = 1 / (sizeof(T) - sizeof(T));
^
1 warning generated.
ar rs libboost_serialization.a boost_serialization/archive_exception.o boost_serialization/basic_archive.o boost_serialization/basic_iarchive.o boost_serialization/basic_iserializer.o boost_serialization/basic_oarchive.o boost_serialization/basic_oserializer.o boost_serialization/basic_pointer_iserializer.o boost_serialization/basic_pointer_oserializer.o boost_serialization/basic_serializer_map.o boost_serialization/basic_text_iprimitive.o boost_serialization/basic_text_oprimitive.o boost_serialization/basic_text_wiprimitive.o boost_serialization/basic_text_woprimitive.o boost_serialization/basic_xml_archive.o boost_serialization/binary_iarchive.o boost_serialization/binary_oarchive.o boost_serialization/binary_wiarchive.o boost_serialization/binary_woarchive.o boost_serialization/codecvt_null.o boost_serialization/extended_type_info.o boost_serialization/extended_type_info_no_rtti.o boost_serialization/extended_type_info_typeid.o boost_serialization/polymorphic_iarchive.o boost_serialization/polymorphic_oarchive.o boost_serialization/stl_port.o boost_serialization/text_iarchive.o boost_serialization/text_oarchive.o boost_serialization/text_wiarchive.o boost_serialization/text_woarchive.o boost_serialization/utf8_codecvt_facet.o boost_serialization/void_cast.o boost_serialization/xml_archive_exception.o boost_serialization/xml_grammar.o boost_serialization/xml_iarchive.o boost_serialization/xml_oarchive.o boost_serialization/xml_wgrammar.o boost_serialization/xml_wiarchive.o boost_serialization/xml_woarchive.o
ar: creating archive libboost_serialization.a
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: libboost_serialization.a(stl_port.o) has no symbols
ar rs libprotobuf.a pb_build/src/google/protobuf/.libs/*.o pb_build/src/google/protobuf/stubs/.libs/*.o pb_build/src/google/protobuf/io/.libs/*.o
ar: creating archive libprotobuf.a
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: libprotobuf.a(atomicops_internals_x86_gcc.o) has no symbols
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib: file: libprotobuf.a(atomicops_internals_x86_msvc.o) has no symbols
clang++ -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o flowWorkspace.so GatingHierarchy.o GatingSet.o GatingSet.pb.o POPINDICES.o R_API.o R_GatingHierarchy.o R_GatingSet.o RcppExports.o calibrationTable.o delimitedMessage.o flowData.o flowJoWorkspace.o gate.o global.o macFlowJoWorkspace.o nodeProperties.o spline.o transformation.o winFlowJoWorkspace.o workspace.o wsNode.o libboost_serialization.a libprotobuf.a /Library/Frameworks/R.framework/Versions/3.2/Resources/library/flowCore/lib/libboost_regex.a -lxml2 -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.1-bioc/meat/flowWorkspace.buildbin-libdir/flowWorkspace/libs
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (flowWorkspace)
>>>>>>>
>>>>>>> FIXING LINKS FOR flowWorkspace.buildbin-libdir/flowWorkspace/libs//flowWorkspace.so
>>>>>>>
install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.2/Resources/lib/libgcc_s.1.dylib" "flowWorkspace.buildbin-libdir/flowWorkspace/libs//flowWorkspace.so"
install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.2/Resources/lib/libgfortran.3.dylib" "flowWorkspace.buildbin-libdir/flowWorkspace/libs//flowWorkspace.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.2/Resources/lib/libreadline.5.2.dylib" "flowWorkspace.buildbin-libdir/flowWorkspace/libs//flowWorkspace.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.2/Resources/lib/libreadline.dylib" "flowWorkspace.buildbin-libdir/flowWorkspace/libs//flowWorkspace.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.2/Resources/lib/libquadmath.0.dylib" "flowWorkspace.buildbin-libdir/flowWorkspace/libs//flowWorkspace.so"