Package: zlibbioc

Version: 1.0.1

Command: /Library/Frameworks/R.framework/Versions/2.14/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch zlibbioc_1.0.1.tar.gz

StartedAt: 2012-03-24 04:57:25 -0700 (Sat, 24 Mar 2012)

EndedAt: 2012-03-24 04:57:47 -0700 (Sat, 24 Mar 2012)

EllapsedTime: 21.8 seconds

RetCode: 0

Status:  WARNINGS

CheckDir: zlibbioc.Rcheck

Warnings: 1

* using log directory '/Users/biocbuild/bbs-2.9-bioc/meat/zlibbioc.Rcheck'
* using R version 2.14.2 (2012-02-29)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'zlibbioc/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'zlibbioc' version '1.0.1'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package 'zlibbioc' can be installed ... WARNING
Found the following significant warnings:
  R_init_zlibbioc.c:1: warning: ISO C forbids an empty source file
See '/Users/biocbuild/bbs-2.9-bioc/meat/zlibbioc.Rcheck/00install.out' for details.
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable compilation flags in Makevars ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking compiled code ... OK
* checking sizes of PDF files under 'inst/doc' ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

WARNING: There was 1 warning, see
  '/Users/biocbuild/bbs-2.9-bioc/meat/zlibbioc.Rcheck/00check.log'
for details

* installing *source* package 'zlibbioc' ...
configure: creating ./config.status
config.status: creating src/Makevars
** libs
*** arch - i386
mkdir -p "/Users/biocbuild/bbs-2.9-bioc/meat/zlibbioc.Rcheck/zlibbioc/include"
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic -c R_init_zlibbioc.c -o R_init_zlibbioc.o
R_init_zlibbioc.c:1: warning: ISO C forbids an empty source file
gcc -arch i386 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o zlibbioc.so R_init_zlibbioc.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.9-bioc/meat/zlibbioc.Rcheck/zlibbioc/libs/i386
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   'UsingZlibbioc.Rnw' 
** testing if installed package can be loaded

* DONE (zlibbioc)

name	user	system	elapsed
pkgconfig	0.009	0.019	0.028
zlibbioc-package	0.027	0.008	0.035