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Package 483/514HostnameOS / ArchBUILDCHECKBUILD BIN
survcomp 1.4.0
Benjamin Haibe-Kains , Markus Schroeder
Snapshot Date: 2012-03-23 18:21:46 -0700 (Fri, 23 Mar 2012)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_9/madman/Rpacks/survcomp
Last Changed Rev: 59920 / Revision: 64395
Last Changed Date: 2011-10-31 15:59:03 -0700 (Mon, 31 Oct 2011)
wilson2 Linux (openSUSE 11.4) / x86_64  OK  ERROR 
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  ERROR  OK 
pitt Mac OS X Leopard (10.5.8) / i386 [ OK ] ERROR  OK 

Summary

Package: survcomp
Version: 1.4.0
Command: /Library/Frameworks/R.framework/Versions/2.14/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data survcomp
StartedAt: 2012-03-23 22:18:08 -0700 (Fri, 23 Mar 2012)
EndedAt: 2012-03-23 22:18:29 -0700 (Fri, 23 Mar 2012)
EllapsedTime: 21.8 seconds
RetCode: 0
Status:  OK 
PackageFile: survcomp_1.4.0.tar.gz
PackageFileSize: 821.3 KiB

Command output

* checking for file 'survcomp/DESCRIPTION' ... OK
* preparing 'survcomp':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to process help pages
* building the PDF package manual
Hmm ... looks like a package
Converting Rd files to LaTeX ...
Creating pdf output from LaTeX ...

This is pdfTeX, Version 3.1415926-1.40.11 (TeX Live 2010)
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entering extended mode
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LaTeX2e <2009/09/24>
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rman-x-2009-06-19, ngerman-x-2009-06-19, ancientgreek, ibycus, arabic, armenian
, basque, bulgarian, catalan, pinyin, coptic, croatian, czech, danish, dutch, u
kenglish, usenglishmax, esperanto, estonian, farsi, finnish, french, galician, 
german, ngerman, swissgerman, monogreek, greek, hungarian, icelandic, assamese,
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telugu, indonesian, interlingua, irish, italian, kurmanji, lao, latin, latvian,
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nian, russian, sanskrit, serbian, slovak, slovenian, spanish, swedish, turkish,
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[]\T1/ptm/m/n/10 - Com-pu-ta-tional Bi-ol-ogy and Func-tional Ge-nomics Lab-o-r
a-tory, Dana-Farber Can-cer In-sti-tute, Boston,

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[]\T1/ptm/m/n/10 - Com-pu-ta-tional Bi-ol-ogy and Func-tional Ge-nomics Lab-o-r
a-tory, Dana-Farber Can-cer In-sti-tute, Boston,
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[]\T1/ptm/m/n/10 The func-tion com-bines sev-eral es-ti-ma-tors us-ing meta-ana
lytical for-mula to com-pute a meta-estimate. 
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 []\T1/fi4/m/n/10 D.index(x, surv.time, surv.event, weights, strat, alpha = 0.0
5, method.test = c("logrank", "likelihood.ratio", "wald"), na.rm = FALSE, ...)[
] 
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\T1/ptm/m/n/10 and ran-dom ef-fects meta-analysis for two-sample com-par-isons 
and cu-mu-la-tive meta-analyses. Draws
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 []\T1/fi4/m/n/10 hazard.ratio(x, surv.time, surv.event, weights, strat, alpha 
= 0.05, method.test = c("logrank", "likelihood.ratio", "wald"), na.rm = FALSE, 
...)[] 
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 []\T1/fi4/m/n/9 metaplot.surv(mn=c(0.4,0.5,0.6), lower=c(0.35,0.4,0.57), upper
=c(0.45,0.6,0.63), labels=c("A","B","C"), xlim=c(0.2,0.8), boxsize=0.5, zero=0.
5, col=meta.colors(box="royalblue",line="darkblue",zero="firebrick"))[] 
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[]\T1/ptm/m/n/10 This dataset con-tains a sub-set of the gene ex-pres-sion, an-
no-ta-tions and clin-i-cal data from the TRANS-

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[]\T1/fi4/m/n/10 exprs(transbig7g)\T1/ptm/m/n/10 : Ma-trix con-tain-ing gene ex
-pres-sions as mea-sured by Affymetrix hgu133a
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[]\T1/ptm/m/n/10 This dataset con-tains a sub-set of the gene ex-pres-sion, an-
no-ta-tions and clin-i-cal data from the TRANS-

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[]\T1/fi4/m/n/10 exprs(transbig7g)\T1/ptm/m/n/10 : Ma-trix con-tain-ing gene ex
-pres-sions as mea-sured by Affymetrix hgu133a
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Saving output to '/private/tmp/RtmpUlIsJh/Rbuild18fce95d04f/survcomp/build/survcomp.pdf' ...
Done
* creating vignettes ... OK
* cleaning src
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* looking to see if a 'data/datalist' file should be added
* building 'survcomp_1.4.0.tar.gz'