Package: methVisual

Version: 1.6.0

Command: E:\biocbld\bbs-2.9-bioc\R\bin\R.exe CMD check --no-vignettes --timings --no-multiarch methVisual_1.6.0.tar.gz

StartedAt: 2012-01-09 04:15:33 -0800 (Mon, 09 Jan 2012)

EndedAt: 2012-01-09 04:16:53 -0800 (Mon, 09 Jan 2012)

EllapsedTime: 80.0 seconds

RetCode: 1

Status:  ERROR

CheckDir: methVisual.Rcheck

Warnings: NA

* using log directory 'E:/biocbld/bbs-2.9-bioc/meat/methVisual.Rcheck'
* using R version 2.14.1 (2011-12-22)
* using platform: i386-pc-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'methVisual/DESCRIPTION' ... OK
* this is package 'methVisual' version '1.6.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package 'methVisual' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... ERROR
Running examples in 'methVisual-Ex.R' failed
The error most likely occurred in:

> assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: makeDataMethGFF
> ### Title: GFF methylation files
> ### Aliases: makeDataMethGFF
> ### Keywords: graphs
> 
> ### ** Examples
> 
> methGFF <- makeDataMethGFF(dir=system.file(package="methVisual",
+ 			"examples/GFF"),chr="7",start=0,end=70,0.75)
processing  1.gff 
processing  1.gff  DONE 
Loading required package: tcltk
Loading Tcl/Tk interface ...Unable to register TclNotifier window class

This application has requested the Runtime to terminate it in an unusual way.
Please contact the application's support team for more information.

* installing *source* package 'methVisual' ...
** R
** data
** inst
** preparing package for lazy loading
Warning in rgl.init(initValue) :
  RGL: error: window class registration failed
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   'methVisual.Rnw' 
** testing if installed package can be loaded
Warning message:
In rgl.init(initValue) : RGL: error: window class registration failed

* DONE (methVisual)

name	user	system	elapsed
Cooccurrence	0.51	0.00	0.53
MethAlignNW	0.93	0.05	1.06
MethDataInput	0.06	0.00	0.06
MethLollipops	0.00	0.01	0.02
MethylQC	0.84	0.04	0.87
cgInAlign	0	0	0
cgMethFinder	0	0	0
coversionGenom	0	0	0
findNonAligned	0.02	0.00	0.02
heatMapMeth	0.06	0.00	0.08