Package: RPA

Version: 1.10.0

Command: rm -rf RPA.buildbin-libdir && mkdir RPA.buildbin-libdir && D:\biocbld\bbs-2.9-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=RPA.buildbin-libdir RPA_1.10.0.tar.gz >RPA-install.out 2>&1 && D:\biocbld\bbs-2.9-bioc\R\bin\R.exe CMD check --library=RPA.buildbin-libdir --install="check:RPA-install.out" --force-multiarch --no-vignettes --timings RPA_1.10.0.tar.gz && mv RPA.buildbin-libdir/* RPA.Rcheck/ && rmdir RPA.buildbin-libdir

StartedAt: 2012-03-24 02:48:02 -0700 (Sat, 24 Mar 2012)

EndedAt: 2012-03-24 02:49:23 -0700 (Sat, 24 Mar 2012)

EllapsedTime: 80.2 seconds

RetCode: 0

Status:  OK

CheckDir: RPA.Rcheck

Warnings: 0

* using log directory 'D:/biocbld/bbs-2.9-bioc/meat/RPA.Rcheck'
* using R version 2.14.2 (2012-02-29)
* using platform: i386-pc-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'RPA/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'RPA' version '1.10.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package 'RPA' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
File 'RPA/R/firstlib.R':
  .onLoad calls:
    cat("\nRPA Copyright (C) 2008-2011 Leo Lahti.\n\nThis program comes with ABSOLUTELY NO WARRANTY.\n\nThis is free software, and you are welcome to redistribute it under the FreeBSD open source license, see the licensing terms for details.\n")

Package startup functions should use 'packageStartupMessage' to
  generate messages.
See section 'Good practice' in ?.onAttach.

* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... NOTE
S3 methods shown with full name in documentation object 'plot':
  'plot.rpa'

The \usage entries for S3 methods should use the \method markup and not
their full name.
See the chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in tests ... OK
* checking tests ...
** running tests for arch 'i386'
  Running 'rpa.fit.test.R'
 OK
** running tests for arch 'x64'
  Running 'rpa.fit.test.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

install for i386

* installing *source* package 'RPA' ...
** R
** inst
** preparing package for lazy loading
     Package    LibPath                             Item      
[1,] "affydata" "D:/biocbld/bbs-2.9-bioc/R/library" "Dilution"
     Title                        
[1,] "AffyBatch instance Dilution"
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   'RPA.Rnw' 
** testing if installed package can be loaded
     Package    LibPath                             Item      
[1,] "affydata" "D:/biocbld/bbs-2.9-bioc/R/library" "Dilution"
     Title                        
[1,] "AffyBatch instance Dilution"

RPA Copyright (C) 2008-2011 Leo Lahti.

This program comes with ABSOLUTELY NO WARRANTY.

This is free software, and you are welcome to redistribute it under the FreeBSD open source license, see the licensing terms for details.

add DLL for x64

* installing *source* package 'RPA' ...
** testing if installed package can be loaded
     Package    LibPath                             Item      
[1,] "affydata" "D:/biocbld/bbs-2.9-bioc/R/library" "Dilution"
     Title                        
[1,] "AffyBatch instance Dilution"

RPA Copyright (C) 2008-2011 Leo Lahti.

This program comes with ABSOLUTELY NO WARRANTY.

This is free software, and you are welcome to redistribute it under the FreeBSD open source license, see the licensing terms for details.
* MD5 sums
packaged installation of 'RPA' as RPA_1.10.0.zip

* DONE (RPA)