Package: PatientGeneSets

Version: 1.3.0

Command: mkdir PatientGeneSets.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh PatientGeneSets_1.3.0.tar.gz /Library/Frameworks/R.framework/Versions/2.14/Resources/bin/R PatientGeneSets.buildbin-libdir

StartedAt: 2011-06-22 06:21:35 -0700 (Wed, 22 Jun 2011)

EndedAt: 2011-06-22 06:21:46 -0700 (Wed, 22 Jun 2011)

EllapsedTime: 10.9 seconds

RetCode: 0

Status:  OK

PackageFile: PatientGeneSets_1.3.0.tgz

PackageFileSize: 2.102 MiB

>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --library=PatientGeneSets.buildbin-libdir PatientGeneSets_1.3.0.tar.gz'
>>>>>>> 

* installing *source* package ‘PatientGeneSets’ ...
** libs
*** arch - i386
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include/i386  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic -c get.cdf.het.berns.c -o get.cdf.het.berns.o
gcc-4.2 -arch i386 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o PatientGeneSets.so get.cdf.het.berns.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.9-bioc/meat/PatientGeneSets.buildbin-libdir/PatientGeneSets/libs/i386
*** arch - ppc
gcc-4.2 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include/ppc  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic -c get.cdf.het.berns.c -o get.cdf.het.berns.o
gcc-4.2 -arch ppc -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o PatientGeneSets.so get.cdf.het.berns.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.9-bioc/meat/PatientGeneSets.buildbin-libdir/PatientGeneSets/libs/ppc
*** arch - x86_64
gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include/x86_64  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic -c get.cdf.het.berns.c -o get.cdf.het.berns.o
gcc-4.2 -arch x86_64 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o PatientGeneSets.so get.cdf.het.berns.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.9-bioc/meat/PatientGeneSets.buildbin-libdir/PatientGeneSets/libs/x86_64
** R
** data
** inst
** preparing package for lazy loading
Loading Tcl/Tk interface ... done
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   ‘PatientGeneSets.Rnw’ 
** testing if installed package can be loaded

* DONE (PatientGeneSets)


>>>>>>> 
>>>>>>> FIXING LINKS FOR PatientGeneSets.buildbin-libdir/PatientGeneSets/libs/i386/PatientGeneSets.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libgcc_s.1.dylib" "PatientGeneSets.buildbin-libdir/PatientGeneSets/libs/i386/PatientGeneSets.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libgfortran.2.dylib" "PatientGeneSets.buildbin-libdir/PatientGeneSets/libs/i386/PatientGeneSets.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libreadline.5.2.dylib" "PatientGeneSets.buildbin-libdir/PatientGeneSets/libs/i386/PatientGeneSets.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libreadline.dylib" "PatientGeneSets.buildbin-libdir/PatientGeneSets/libs/i386/PatientGeneSets.so"


>>>>>>> 
>>>>>>> FIXING LINKS FOR PatientGeneSets.buildbin-libdir/PatientGeneSets/libs/ppc/PatientGeneSets.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libgcc_s.1.dylib" "PatientGeneSets.buildbin-libdir/PatientGeneSets/libs/ppc/PatientGeneSets.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libgfortran.2.dylib" "PatientGeneSets.buildbin-libdir/PatientGeneSets/libs/ppc/PatientGeneSets.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libreadline.5.2.dylib" "PatientGeneSets.buildbin-libdir/PatientGeneSets/libs/ppc/PatientGeneSets.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libreadline.dylib" "PatientGeneSets.buildbin-libdir/PatientGeneSets/libs/ppc/PatientGeneSets.so"


>>>>>>> 
>>>>>>> FIXING LINKS FOR PatientGeneSets.buildbin-libdir/PatientGeneSets/libs/x86_64/PatientGeneSets.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libgcc_s.1.dylib" "PatientGeneSets.buildbin-libdir/PatientGeneSets/libs/x86_64/PatientGeneSets.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libgfortran.2.dylib" "PatientGeneSets.buildbin-libdir/PatientGeneSets/libs/x86_64/PatientGeneSets.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libreadline.5.2.dylib" "PatientGeneSets.buildbin-libdir/PatientGeneSets/libs/x86_64/PatientGeneSets.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libreadline.dylib" "PatientGeneSets.buildbin-libdir/PatientGeneSets/libs/x86_64/PatientGeneSets.so"