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Package 308/514HostnameOS / ArchBUILDCHECKBUILD BIN
MEDIPS 1.4.0
Lukas Chavez
Snapshot Date: 2012-03-23 18:21:46 -0700 (Fri, 23 Mar 2012)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_9/madman/Rpacks/MEDIPS
Last Changed Rev: 59920 / Revision: 64395
Last Changed Date: 2011-10-31 15:59:03 -0700 (Mon, 31 Oct 2011)
wilson2 Linux (openSUSE 11.4) / x86_64  OK  OK 
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK [ OK ]
pitt Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: MEDIPS
Version: 1.4.0
Command: rm -rf MEDIPS.buildbin-libdir && mkdir MEDIPS.buildbin-libdir && D:\biocbld\bbs-2.9-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=MEDIPS.buildbin-libdir MEDIPS_1.4.0.tar.gz
StartedAt: 2012-03-24 03:54:53 -0700 (Sat, 24 Mar 2012)
EndedAt: 2012-03-24 03:56:17 -0700 (Sat, 24 Mar 2012)
EllapsedTime: 83.3 seconds
RetCode: 0
Status:  OK  
PackageFile: MEDIPS_1.4.0.zip
PackageFileSize: 12.19 MiB

Command output


install for i386

* installing *source* package 'MEDIPS' ...
** libs
gcc  -I"D:/biocbld/BBS-2˜1.9-B/R/include"          -O3 -Wall  -std=gnu99 -mtune=core2 -c annotate.c -o annotate.o
annotate.c: In function 'annotate':
annotate.c:21:10: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
annotate.c:32:4: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
annotate.c:43:4: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
annotate.c:8:40: warning: variable 'rc' set but not used [-Wunused-but-set-variable]
annotate.c:8:32: warning: unused variable 'rj' [-Wunused-variable]
annotate.c:8:25: warning: variable 'ac' set but not used [-Wunused-but-set-variable]
annotate.c:8:17: warning: unused variable 'aj' [-Wunused-variable]
gcc  -I"D:/biocbld/BBS-2˜1.9-B/R/include"          -O3 -Wall  -std=gnu99 -mtune=core2 -c calibration.c -o calibration.o
calibration.c: In function 'calibration':
calibration.c:10:6: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
gcc  -I"D:/biocbld/BBS-2˜1.9-B/R/include"          -O3 -Wall  -std=gnu99 -mtune=core2 -c coupling.c -o coupling.o
coupling.c: In function 'coupling':
coupling.c:26:9: warning: statement with no effect [-Wunused-value]
coupling.c:8:9: warning: variable 'score' set but not used [-Wunused-but-set-variable]
gcc  -I"D:/biocbld/BBS-2˜1.9-B/R/include"          -O3 -Wall  -std=gnu99 -mtune=core2 -c profile.c -o profile.o
profile.c: In function 'profile':
profile.c:42:15: warning: unused variable 'wie' [-Wunused-variable]
profile.c:221:14: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
profile.c:221:14: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
profile.c:221:14: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
profile.c:221:14: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
profile.c:227:20: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
profile.c:227:20: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
profile.c:227:20: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
profile.c:227:20: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
profile.c:263:17: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
profile.c:263:17: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
profile.c:263:17: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
profile.c:263:17: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
profile.c:269:11: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
profile.c:269:11: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
profile.c:269:11: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
profile.c:269:11: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
profile.c:34:9: warning: unused variable 'items' [-Wunused-variable]
profile.c:13:13: warning: variable 'ptrgenome' set but not used [-Wunused-but-set-variable]
profile.c:11:22: warning: unused variable 'pvalue' [-Wunused-variable]
profile.c:11:18: warning: unused variable 'Val' [-Wunused-variable]
profile.c:246:21: warning: 'nY' may be used uninitialized in this function [-Wuninitialized]
profile.c:274:8: warning: 'Y' may be used uninitialized in this function [-Wuninitialized]
profile.c:127:56: warning: 'ptr_input' may be used uninitialized in this function [-Wuninitialized]
profile.c:121:32: warning: 'ptrgenome_norm2' may be used uninitialized in this function [-Wuninitialized]
profile.c:124:31: warning: 'ptrgenome_raw2' may be used uninitialized in this function [-Wuninitialized]
gcc  -I"D:/biocbld/BBS-2˜1.9-B/R/include"          -O3 -Wall  -std=gnu99 -mtune=core2 -c roiprofile.c -o roiprofile.o
roiprofile.c: In function 'calculate':
roiprofile.c:181:6: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
roiprofile.c:181:6: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
roiprofile.c:181:6: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
roiprofile.c:181:6: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
roiprofile.c:186:11: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
roiprofile.c:186:11: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
roiprofile.c:186:11: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
roiprofile.c:186:11: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
roiprofile.c:221:7: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
roiprofile.c:221:7: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
roiprofile.c:221:7: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
roiprofile.c:221:7: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
roiprofile.c:226:11: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
roiprofile.c:226:11: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
roiprofile.c:226:11: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
roiprofile.c:226:11: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
roiprofile.c:23:28: warning: variable 'ptrgenome_pos' set but not used [-Wunused-but-set-variable]
roiprofile.c:12:18: warning: unused variable 'Val' [-Wunused-variable]
roiprofile.c: In function 'roiprofile':
roiprofile.c:280:7: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
roiprofile.c:282:13: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
roiprofile.c:294:6: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
roiprofile.c:296:6: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
roiprofile.c:254:27: warning: variable 'ncol' set but not used [-Wunused-but-set-variable]
roiprofile.c:248:62: warning: unused variable 'nProtected' [-Wunused-variable]
roiprofile.c: In function 'calculate':
roiprofile.c:69:47: warning: 'ptrinput' may be used uninitialized in this function [-Wuninitialized]
roiprofile.c:69:31: warning: 'IN' may be used uninitialized in this function [-Wuninitialized]
gcc -shared -s -static-libgcc -o MEDIPS.dll tmp.def annotate.o calibration.o coupling.o profile.o roiprofile.o -LD:/biocbld/BBS-2˜1.9-B/R/bin/i386 -lR
installing to D:/biocbld/bbs-2.9-bioc/meat/MEDIPS.buildbin-libdir/MEDIPS/libs/i386
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   'MEDIPS.Rnw' 
** testing if installed package can be loaded

add DLL for x64

* installing *source* package 'MEDIPS' ...
** libs
gcc -m64 -I"D:/biocbld/BBS-2˜1.9-B/R/include"     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c annotate.c -o annotate.o
annotate.c: In function 'annotate':
annotate.c:21:10: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
annotate.c:32:4: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
annotate.c:43:4: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
annotate.c:8:40: warning: variable 'rc' set but not used [-Wunused-but-set-variable]
annotate.c:8:32: warning: unused variable 'rj' [-Wunused-variable]
annotate.c:8:25: warning: variable 'ac' set but not used [-Wunused-but-set-variable]
annotate.c:8:17: warning: unused variable 'aj' [-Wunused-variable]
gcc -m64 -I"D:/biocbld/BBS-2˜1.9-B/R/include"     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c calibration.c -o calibration.o
calibration.c: In function 'calibration':
calibration.c:10:6: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
gcc -m64 -I"D:/biocbld/BBS-2˜1.9-B/R/include"     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c coupling.c -o coupling.o
coupling.c: In function 'coupling':
coupling.c:26:9: warning: statement with no effect [-Wunused-value]
coupling.c:8:9: warning: variable 'score' set but not used [-Wunused-but-set-variable]
gcc -m64 -I"D:/biocbld/BBS-2˜1.9-B/R/include"     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c profile.c -o profile.o
profile.c: In function 'profile':
profile.c:42:15: warning: unused variable 'wie' [-Wunused-variable]
profile.c:221:14: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
profile.c:221:14: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
profile.c:221:14: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
profile.c:221:14: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
profile.c:227:20: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
profile.c:227:20: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
profile.c:227:20: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
profile.c:227:20: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
profile.c:263:17: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
profile.c:263:17: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
profile.c:263:17: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
profile.c:263:17: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
profile.c:269:11: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
profile.c:269:11: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
profile.c:269:11: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
profile.c:269:11: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
profile.c:34:9: warning: unused variable 'items' [-Wunused-variable]
profile.c:13:13: warning: variable 'ptrgenome' set but not used [-Wunused-but-set-variable]
profile.c:11:22: warning: unused variable 'pvalue' [-Wunused-variable]
profile.c:11:18: warning: unused variable 'Val' [-Wunused-variable]
profile.c:246:21: warning: 'nY' may be used uninitialized in this function [-Wuninitialized]
profile.c:274:8: warning: 'Y' may be used uninitialized in this function [-Wuninitialized]
profile.c:7:6: warning: 'ptr_input' may be used uninitialized in this function [-Wuninitialized]
profile.c:7:6: warning: 'ptrgenome_norm2' may be used uninitialized in this function [-Wuninitialized]
profile.c:7:6: warning: 'ptrgenome_raw2' may be used uninitialized in this function [-Wuninitialized]
gcc -m64 -I"D:/biocbld/BBS-2˜1.9-B/R/include"     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c roiprofile.c -o roiprofile.o
roiprofile.c: In function 'calculate':
roiprofile.c:181:6: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
roiprofile.c:181:6: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
roiprofile.c:181:6: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
roiprofile.c:181:6: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
roiprofile.c:186:11: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
roiprofile.c:186:11: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
roiprofile.c:186:11: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
roiprofile.c:186:11: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
roiprofile.c:221:7: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
roiprofile.c:221:7: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
roiprofile.c:221:7: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
roiprofile.c:221:7: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
roiprofile.c:226:11: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
roiprofile.c:226:11: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
roiprofile.c:226:11: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
roiprofile.c:226:11: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
roiprofile.c:23:28: warning: variable 'ptrgenome_pos' set but not used [-Wunused-but-set-variable]
roiprofile.c:12:18: warning: unused variable 'Val' [-Wunused-variable]
roiprofile.c: In function 'roiprofile':
roiprofile.c:280:7: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
roiprofile.c:282:13: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
roiprofile.c:294:6: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
roiprofile.c:296:6: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
roiprofile.c:254:27: warning: variable 'ncol' set but not used [-Wunused-but-set-variable]
roiprofile.c:248:62: warning: unused variable 'nProtected' [-Wunused-variable]
roiprofile.c: In function 'calculate':
roiprofile.c:7:6: warning: 'ptrinput' may be used uninitialized in this function [-Wuninitialized]
roiprofile.c:69:31: warning: 'IN' may be used uninitialized in this function [-Wuninitialized]
gcc -m64 -shared -s -static-libgcc -o MEDIPS.dll tmp.def annotate.o calibration.o coupling.o profile.o roiprofile.o -Ld:/RCompile/CRANpkg/extralibs64/local/lib/x64 -Ld:/RCompile/CRANpkg/extralibs64/local/lib -LD:/biocbld/BBS-2˜1.9-B/R/bin/x64 -lR
installing to D:/biocbld/bbs-2.9-bioc/meat/MEDIPS.buildbin-libdir/MEDIPS/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'MEDIPS' as MEDIPS_1.4.0.zip

* DONE (MEDIPS)