Package: DAVIDQuery

Version: 1.14.0

Command: /home/biocbuild/bbs-2.9-bioc/R/bin/R CMD check --no-vignettes --timings DAVIDQuery_1.14.0.tar.gz

StartedAt: 2012-03-24 00:01:53 -0700 (Sat, 24 Mar 2012)

EndedAt: 2012-03-24 00:02:20 -0700 (Sat, 24 Mar 2012)

EllapsedTime: 27.0 seconds

RetCode: 0

Status:  OK

CheckDir: DAVIDQuery.Rcheck

Warnings: 0

* using log directory ‘/loc/home/biocbuild/bbs-2.9-bioc/meat/DAVIDQuery.Rcheck’
* using R version 2.14.2 (2012-02-29)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘DAVIDQuery/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘DAVIDQuery’ version ‘1.14.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package ‘DAVIDQuery’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
File ‘DAVIDQuery/R/zzz.R’:
  .onAttach calls:
    cat("This is DAVIDQuery Version ", DQVersion, " ", DQdate, "\n")

Package startup functions should use ‘packageStartupMessage’ to
  generate messages.
See section ‘Good practice’ in ?.onAttach.

* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

* installing *source* package ‘DAVIDQuery’ ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   ‘DAVIDQuery.Rnw’ using ‘latin-9’ 
** testing if installed package can be loaded
This is DAVIDQuery Version  1.14.0   2010-06-10 

* DONE (DAVIDQuery)

name	user	system	elapsed
DAVIDQuery	0.040	0.000	1.304
bracketedStrings	0.000	0.000	0.001
convertIDList	0	0	0
findInBrackets	0	0	0
getAffyChipTypes	0	0	0
getAffyProbesetList	0.332	0.020	3.549
getAnnotationChoices	0	0	0
getIdConversionChoices	0	0	0
requestIDConversion	0.004	0.000	0.000
testGene2Gene	0.032	0.004	1.473
uploadIDList	0	0	0