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Package 186/467 | Hostname | OS / Arch | BUILD | CHECK | BUILD BIN | ||||
GenomeGraphs 1.12.0 Steffen Durinck
| lamb1 | Linux (openSUSE 11.3) / x86_64 | OK | [ OK ] | |||||
liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | OK | OK | |||||
gewurz | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | OK | WARNINGS | OK | |||||
pelham | Mac OS X Leopard (10.5.8) / i386 | OK | OK | OK |
Package: GenomeGraphs |
Version: 1.12.0 |
Command: /home/biocbuild/bbs-2.8-bioc/R/bin/R CMD check --no-vignettes --timings GenomeGraphs_1.12.0.tar.gz |
StartedAt: 2011-10-20 12:51:21 -0700 (Thu, 20 Oct 2011) |
EndedAt: 2011-10-20 12:53:07 -0700 (Thu, 20 Oct 2011) |
EllapsedTime: 106.0 seconds |
RetCode: 0 |
Status: OK |
CheckDir: GenomeGraphs.Rcheck |
Warnings: 0 |
* using log directory ‘/loc/home/biocbuild/bbs-2.8-bioc/meat/GenomeGraphs.Rcheck’ * using R version 2.13.2 (2011-09-30) * using platform: x86_64-unknown-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘GenomeGraphs/DESCRIPTION’ ... OK * this is package ‘GenomeGraphs’ version ‘1.12.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking whether package ‘GenomeGraphs’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking for unstated dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking examples ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignettes ... SKIPPED * checking PDF version of manual ... OK
GenomeGraphs.Rcheck/00install.out:
* installing *source* package ‘GenomeGraphs’ ... ** R ** data ** inst ** preparing package for lazy loading ** help *** installing help indices ** building package indices ... ** testing if installed package can be loaded * DONE (GenomeGraphs)
GenomeGraphs.Rcheck/GenomeGraphs-Ex.timings:
name | user | system | elapsed | |
AnnotationTrack-class | 0.000 | 0.000 | 0.002 | |
BaseTrack-class | 0.000 | 0.000 | 0.001 | |
DisplayPars-class | 0.000 | 0.000 | 0.002 | |
DisplayPars | 0.412 | 0.016 | 3.863 | |
ExonArray-class | 0.004 | 0.000 | 0.004 | |
Gene-class | 0 | 0 | 0 | |
GeneModel-class | 0.108 | 0.004 | 0.115 | |
GeneRegion-class | 0.000 | 0.000 | 0.001 | |
GenericArray-class | 0 | 0 | 0 | |
GenomeAxis-class | 0 | 0 | 0 | |
HighlightRegion-class | 0.000 | 0.000 | 0.001 | |
Ideogram-class | 0.004 | 0.000 | 0.000 | |
ImplementsTrackOverlay-class | 0.000 | 0.000 | 0.001 | |
Legend-class | 0 | 0 | 0 | |
MappedRead-class | 0 | 0 | 0 | |
Overlay-class | 0 | 0 | 0 | |
RectangleOverlay-class | 0.004 | 0.000 | 0.003 | |
Segmentation-class | 0.000 | 0.000 | 0.001 | |
Smoothing-class | 0.004 | 0.000 | 0.000 | |
TextOverlay-class | 0.000 | 0.000 | 0.001 | |
Title-class | 0.000 | 0.000 | 0.001 | |
TrackOverlay-class | 0.004 | 0.000 | 0.000 | |
Transcript-class | 0 | 0 | 0 | |
TranscriptRegion-class | 0.000 | 0.000 | 0.001 | |
cn | 0 | 0 | 0 | |
exonProbePos | 0 | 0 | 0 | |
gdObject-class | 0.000 | 0.000 | 0.001 | |
gdPlot | 1.964 | 0.016 | 59.785 | |
getPar | 0.004 | 0.000 | 0.002 | |
getSize | 0 | 0 | 0 | |
ideogramTab | 0.004 | 0.000 | 0.011 | |
intensity | 0 | 0 | 0 | |
makeAnnotationTrack | 0.04 | 0.00 | 0.04 | |
makeBaseTrack | 0.004 | 0.000 | 0.002 | |
makeExonArray | 0.000 | 0.000 | 0.002 | |
makeGene | 0.000 | 0.000 | 0.001 | |
makeGeneModel | 0.000 | 0.000 | 0.001 | |
makeGeneRegion | 0.000 | 0.000 | 0.002 | |
makeGenericArray | 0.000 | 0.000 | 0.001 | |
makeGenomeAxis | 0 | 0 | 0 | |
makeIdeogram | 0.004 | 0.000 | 0.001 | |
makeLegend | 0.000 | 0.000 | 0.001 | |
makeRectangleOverlay | 0.076 | 0.000 | 0.073 | |
makeSegmentation | 0.056 | 0.004 | 0.057 | |
makeSmoothing | 0.076 | 0.004 | 0.083 | |
makeTextOverlay | 0.064 | 0.000 | 0.071 | |
makeTitle | 0.000 | 0.000 | 0.001 | |
makeTranscript | 0.000 | 0.000 | 0.001 | |
probestart | 0 | 0 | 0 | |
segEnd | 0 | 0 | 0 | |
segStart | 0 | 0 | 0 | |
segments | 0 | 0 | 0 | |
seqDataEx | 0.020 | 0.000 | 0.021 | |
setPar | 0.020 | 0.000 | 0.021 | |
showDisplayOptions | 0.000 | 0.000 | 0.001 | |
unrData | 0 | 0 | 0 | |
unrNProbes | 0 | 0 | 0 | |
unrPositions | 0 | 0 | 0 | |
yeastCons1 | 0.000 | 0.000 | 0.001 | |