BufferedMatrix 1.14.0
Benjamin Milo Bolstad
| Snapshot Date: 2011-04-06 23:24:01 -0700 (Wed, 06 Apr 2011) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_7/madman/Rpacks/BufferedMatrix | | Last Changed Rev: 50293 / Revision: 54588 | | Last Changed Date: 2010-10-17 22:34:23 -0700 (Sun, 17 Oct 2010) |
| lamb2 | Linux (openSUSE 11.2) / x86_64 | OK | [ OK ] | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | OK | OK |
| gewurz | Windows Server 2008 R2 Enterprise (64-bit) / x64 | OK | OK | OK |
* using log directory ‘/loc/home/biocbuild/bbs-2.7-bioc/meat/BufferedMatrix.Rcheck’
* using R version 2.12.2 (2011-02-25)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘BufferedMatrix/DESCRIPTION’ ... OK
* this is package ‘BufferedMatrix’ version ‘1.14.0’
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package ‘BufferedMatrix’ can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
prepare_Rd: createBufferedMatrix.Rd:26: Dropping empty section \keyword
prepare_Rd: createBufferedMatrix.Rd:17-18: Dropping empty section \details
prepare_Rd: createBufferedMatrix.Rd:15-16: Dropping empty section \value
prepare_Rd: createBufferedMatrix.Rd:19-20: Dropping empty section \references
prepare_Rd: createBufferedMatrix.Rd:21-22: Dropping empty section \seealso
prepare_Rd: createBufferedMatrix.Rd:23-24: Dropping empty section \examples
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking examples ... NONE
* checking for unstated dependencies in tests ... OK
* checking tests ...
Running ‘Rcodetesting.R’
Running ‘c_code_level_tests.R’
Running ‘objectTesting.R’
Running ‘rawCalltesting.R’
OK
* checking package vignettes in ‘inst/doc’ ... SKIPPED
* checking PDF version of manual ... OK
* installing *source* package ‘BufferedMatrix’ ...
** libs
gcc -std=gnu99 -I/home/biocbuild/bbs-2.7-bioc/R/include -I/usr/local/include -fpic -g -O2 -c RBufferedMatrix.c -o RBufferedMatrix.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.7-bioc/R/include -I/usr/local/include -fpic -g -O2 -c doubleBufferedMatrix.c -o doubleBufferedMatrix.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.7-bioc/R/include -I/usr/local/include -fpic -g -O2 -c doubleBufferedMatrix_C_tests.c -o doubleBufferedMatrix_C_tests.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.7-bioc/R/include -I/usr/local/include -fpic -g -O2 -c init_package.c -o init_package.o
gcc -std=gnu99 -shared -L/usr/local/lib64 -o BufferedMatrix.so RBufferedMatrix.o doubleBufferedMatrix.o doubleBufferedMatrix_C_tests.o init_package.o -L/home/biocbuild/bbs-2.7-bioc/R/lib -lR
installing to /loc/home/biocbuild/bbs-2.7-bioc/meat/BufferedMatrix.Rcheck/BufferedMatrix/libs
** R
** inst
** preparing package for lazy loading
Creating a generic for ‘rowMeans’ in package ‘BufferedMatrix’
(the supplied definition differs from and overrides the implicit generic
in package ‘base’: Formal arguments differ (in default values?))
Creating a generic for ‘rowSums’ in package ‘BufferedMatrix’
(the supplied definition differs from and overrides the implicit generic
in package ‘base’: Formal arguments differ (in default values?))
Creating a generic for ‘colMeans’ in package ‘BufferedMatrix’
(the supplied definition differs from and overrides the implicit generic
in package ‘base’: Formal arguments differ (in default values?))
Creating a generic for ‘colSums’ in package ‘BufferedMatrix’
(the supplied definition differs from and overrides the implicit generic
in package ‘base’: Formal arguments differ (in default values?))
Creating a new generic function for "ncol" in "BufferedMatrix"
Creating a new generic function for "nrow" in "BufferedMatrix"
Creating a new generic function for "mean" in "BufferedMatrix"
Creating a new generic function for "as.matrix" in "BufferedMatrix"
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded
* DONE (BufferedMatrix)