Package: cellHTS

Version: 1.18.0

Command: E:\biocbld\bbs-2.6-bioc\R\bin\R.exe CMD check --no-vignettes --timings cellHTS_1.18.0.tar.gz

StartedAt: 2010-10-04 17:24:50 -0700 (Mon, 04 Oct 2010)

EndedAt: 2010-10-04 17:26:44 -0700 (Mon, 04 Oct 2010)

EllapsedTime: 113.4 seconds

RetCode: 0

Status:  OK

CheckDir: cellHTS.Rcheck

Warnings: 0

* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.6-bioc/meat/cellHTS.Rcheck'
* using R version 2.11.1 (2010-05-31)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'cellHTS/DESCRIPTION' ... OK
* this is package 'cellHTS' version '1.18.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'cellHTS' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
prepare_Rd: oneRowPerId.Rd:19: Dropping empty section \details
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

* install options are ' --no-html'

* installing *source* package 'cellHTS' ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: Biobase

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: RColorBrewer
Loading required package: grid
Loading required package: rrcov
Loading required package: robustbase
Loading required package: pcaPP
Loading required package: mvtnorm
Scalable Robust Estimators with High Breakdown Point (version 1.1-00)
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (cellHTS)

name	user	system	elapsed
Bscore	0.55	0.01	0.57
ROC	0.02	0.00	0.06
annotate	0	0	0
bdgpbiomart	0.26	0.02	0.28
configure	0	0	0
data-KcViab	0.25	0.00	0.25
data-KcViabSmall	0.02	0.00	0.02
getEnVisionRawData	0.03	0.00	0.26
getLibraryPlate	0.03	0.00	0.03
getMatrix	0.02	0.00	0.02
imageScreen	0.09	0.00	0.09
normalizeChannels	0	0	0
normalizePlates	0.02	0.01	0.04
oneRowPerId	0	0	0
plotPlateLibrary	1.17	0.00	1.17
plotSpatialEffects	0.53	0.00	0.53
print.cellHTS	0.01	0.00	0.09
readPlateData	0.13	0.05	0.19
screenMatch	0.27	0.01	0.28
summarizeChannels	0	0	0
summarizeReplicates	0.06	0.00	0.06
write.tabdel	0.03	0.00	0.03
writeReport	0.00	0.02	0.01
writeTab	0.03	0.01	0.05