davidTiling 1.2.8
Wolfgang Huber
| Snapshot Date: 2009-04-10 00:03:00 -0700 (Fri, 10 Apr 2009) | | URL: https://hedgehog.fhcrc.org/bioc-data/trunk/experiment/pkgs/davidTiling | | Last Changed Rev: 724 / Revision: 760 | | Last Changed Date: 2008-10-08 08:55:01 -0700 (Wed, 08 Oct 2008) |
| wilson2 | Linux (openSUSE 10.3) / x86_64 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | [ OK ] | OK |
| pelham | Mac OS X Leopard (10.5.6) / i386 | OK | OK | OK |
* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.3-data-experiment/meat/davidTiling.Rcheck'
* using R version 2.8.1 (2008-12-22)
* using session charset: ISO8859-1
* checking for file 'davidTiling/DESCRIPTION' ... OK
* this is package 'davidTiling' version '1.2.8'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'davidTiling' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
GOHyperG: no visible global function definition for
'replaceSystematicByCommonName'
scoreSegments: no visible binding for global variable 'yeastFeatures'
scoreSegments: no visible binding for global variable 'chrs'
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* creating davidTiling-Ex.R ... OK
* checking examples ... OK
* creating davidTiling-manual.tex ... OK
* checking davidTiling-manual.tex using pdflatex ... OK
installing R.css in E:/biocbld/bbs-2.3-data-experiment/meat/davidTiling.Rcheck
---------- Making package davidTiling ------------
adding build stamp to DESCRIPTION
installing NAMESPACE file and metadata
installing R files
installing inst files
installing data files
preparing package davidTiling for lazy loading
Loading required package: Biobase
Loading required package: tools
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Loading required package: tilingArray
Loading required package: affy
Loading required package: RColorBrewer
Loading required package: grid
Loading required package: strucchange
Loading required package: zoo
Attaching package: 'zoo'
The following object(s) are masked from package:base :
as.Date.numeric
Loading required package: sandwich
Loading required package: vsn
Loading required package: lattice
Loading required package: limma
Loading required package: genefilter
Loading required package: survival
Loading required package: splines
Loading required package: geneplotter
Loading required package: annotate
Loading required package: AnnotationDbi
Loading required package: xtable
KernSmooth 2.22 installed
Copyright M. P. Wand 1997
Attaching package: 'geneplotter'
The following object(s) are masked from package:lattice :
panel.smoothScatter
Loading required package: pixmap
Loading required package: GO.db
Loading required package: DBI
installing man source files
installing indices
Loading required package: methods
not zipping data
installing help
>>> Building/Updating help pages for package 'davidTiling'
Formats: text html latex example chm
Note: removing empty section \examples in file 'GOHyperG.Rd'
Note: removing empty section \examples in file 'GOHyperG.Rd'
GOHyperG text html latex chm
davidTiling text html latex example chm
getAttributeField text html latex example chm
Note: removing empty section \examples in file 'getGO.Rd'
Note: removing empty section \examples in file 'getGO.Rd'
getGO text html latex chm
gff text html latex example chm
probeAnno text html latex example chm
Note: removing empty section \details in file 'scatterWithHist.Rd'
Note: removing empty section \details in file 'scatterWithHist.Rd'
scatterWithHist text html latex example chm
Note: removing empty section \examples in file 'scoreSegments.Rd'
Note: removing empty section \examples in file 'scoreSegments.Rd'
scoreSegments text html latex chm
showDens text html latex example chm
yeastFeatures text html latex example chm
Microsoft HTML Help Compiler 4.74.8702
Compiling e:\biocbld\bbs-2.3-data-experiment\meat\davidTiling.Rcheck\00_pkg_src\davidTiling\chm\davidTiling.chm
Compile time: 0 minutes, 0 seconds
11 Topics
28 Local links
0 Internet links
1 Graphic
Created e:\biocbld\bbs-2.3-data-experiment\meat\davidTiling.Rcheck\00_pkg_src\davidTiling\chm\davidTiling.chm, 28,098 bytes
Compression decreased file by 6,142 bytes.
adding MD5 sums
* DONE (davidTiling)