ccTutorial 1.0.2
Joern Toedling
| Snapshot Date: 2009-04-10 00:03:00 -0700 (Fri, 10 Apr 2009) | | URL: https://hedgehog.fhcrc.org/bioc-data/trunk/experiment/pkgs/ccTutorial | | Last Changed Rev: 749 / Revision: 760 | | Last Changed Date: 2009-02-10 07:02:07 -0800 (Tue, 10 Feb 2009) |
| wilson2 | Linux (openSUSE 10.3) / x86_64 | ERROR | skipped | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | [ OK ] | OK |
| pelham | Mac OS X Leopard (10.5.6) / i386 | OK | OK | OK |
* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.3-data-experiment/meat/ccTutorial.Rcheck'
* using R version 2.8.1 (2008-12-22)
* using session charset: ISO8859-1
* checking for file 'ccTutorial/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'ccTutorial' version '1.0.2'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'ccTutorial' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* creating ccTutorial-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating ccTutorial-manual.tex ... OK
* checking ccTutorial-manual.tex using pdflatex ... OK
installing R.css in E:/biocbld/bbs-2.3-data-experiment/meat/ccTutorial.Rcheck
---------- Making package ccTutorial ------------
adding build stamp to DESCRIPTION
installing R files
installing inst files
installing data files
preparing package ccTutorial for lazy loading
Loading required package: Ringo
Loading required package: Biobase
Loading required package: tools
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Loading required package: genefilter
Loading required package: survival
Loading required package: splines
Loading required package: geneplotter
Loading required package: lattice
Loading required package: annotate
Loading required package: AnnotationDbi
Loading required package: xtable
KernSmooth 2.22 installed
Copyright M. P. Wand 1997
Attaching package: 'geneplotter'
The following object(s) are masked from package:lattice :
panel.smoothScatter
Loading required package: limma
Loading required package: vsn
Loading required package: affy
Loading required package: RColorBrewer
Loading required package: SparseM
Attaching package: 'SparseM'
The following object(s) are masked from package:stats :
model.response
The following object(s) are masked from package:base :
backsolve,
chol
installing man source files
installing indices
Loading required package: methods
Loading required package: Biobase
Loading required package: tools
Loading required package: utils
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
not zipping data
installing help
>>> Building/Updating help pages for package 'ccTutorial'
Formats: text html latex example chm
X text html latex example chm
arrayGenesToProbeSets text html latex example chm
barreraExpressionX text html latex example chm
ccTutorial-package text html latex chm
chersX text html latex example chm
mm9g2p text html latex example chm
mm9gene2GO text html latex example chm
mm9genes text html latex example chm
probeAnno text html latex example chm
Microsoft HTML Help Compiler 4.74.8702
Compiling e:\biocbld\bbs-2.3-data-experiment\meat\ccTutorial.Rcheck\00_pkg_src\ccTutorial\chm\ccTutorial.chm
Compile time: 0 minutes, 0 seconds
10 Topics
19 Local links
0 Internet links
1 Graphic
Created e:\biocbld\bbs-2.3-data-experiment\meat\ccTutorial.Rcheck\00_pkg_src\ccTutorial\chm\ccTutorial.chm, 22,567 bytes
Compression decreased file by 2,488 bytes.
adding MD5 sums
* DONE (ccTutorial)