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MAQCsubset 1.0.13
VJ Carey
Snapshot Date: 2009-04-10 00:03:00 -0700 (Fri, 10 Apr 2009)
URL: https://hedgehog.fhcrc.org/bioc-data/trunk/experiment/pkgs/MAQCsubset
Last Changed Rev: 659 / Revision: 760
Last Changed Date: 2008-05-27 12:56:09 -0700 (Tue, 27 May 2008)
wilson2 Linux (openSUSE 10.3) / x86_64  OK  WARNINGS 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  WARNINGS  OK 
pelham Mac OS X Leopard (10.5.6) / i386  OK [ WARNINGS ] OK 
Package: MAQCsubset
Version: 1.0.13
Command: /Library/Frameworks/R.framework/Versions/2.8/Resources/bin/R CMD check --no-vignettes MAQCsubset_1.0.13.tar.gz
StartedAt: 2009-04-10 02:00:03 -0700 (Fri, 10 Apr 2009)
EndedAt: 2009-04-10 02:02:52 -0700 (Fri, 10 Apr 2009)
EllapsedTime: 169.3 seconds
RetCode: 0
Status: WARNINGS
CheckDir: MAQCsubset.Rcheck
Warnings: 1

Command output

* checking for working pdflatex ... OK
* using log directory '/Users/biocbuild/bbs-2.3-data-experiment/meat/MAQCsubset.Rcheck'
* using R version 2.8.1 Patched (2009-03-18 r48200)
* using session charset: ASCII
* checking for file 'MAQCsubset/DESCRIPTION' ... OK
* this is package 'MAQCsubset' version '1.0.13'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'MAQCsubset' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... WARNING
package 'methods' is used but not declared
See the information on DESCRIPTION files in the chapter 'Creating R
packages' of the 'Writing R Extensions' manual.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* creating MAQCsubset-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating MAQCsubset-manual.tex ... OK
* checking MAQCsubset-manual.tex using pdflatex ... OK

WARNING: There was 1 warning, see
  /Users/biocbuild/bbs-2.3-data-experiment/meat/MAQCsubset.Rcheck/00check.log
for details

MAQCsubset.Rcheck/00install.out:

* Installing *source* package 'MAQCsubset' ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Creating a new generic function for "plot" in "MAQCsubset"
Creating a new generic function for "lines" in "MAQCsubset"
** help
 >>> Building/Updating help pages for package 'MAQCsubset'
     Formats: text html latex example 
  MAQCsubset                        text    html    latex   example
  gehMAQCsubDef                     text    html    latex   example
  gnfCerebHi                        text    html    latex   example
  proboStruct-class                 text    html    latex   example
  proboscis                         text    html    latex   example
** building package indices ...
* DONE (MAQCsubset)