PCpheno 1.4.1
Nolwenn Le Meur
| Bioconductor Changelog | | Snapshot Date: 2009-04-18 11:27:48 -0700 (Sat, 18 Apr 2009) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_3/madman/Rpacks/PCpheno | | Last Changed Rev: 35381 / Revision: 38965 | | Last Changed Date: 2008-11-17 12:23:39 -0800 (Mon, 17 Nov 2008) |
| wilson2 | Linux (openSUSE 11.1) / x86_64 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | [ OK ] | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | OK |
| pelham | Mac OS X Leopard (10.5.6) / i386 | OK | OK | OK |
* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.3-bioc/meat/PCpheno.Rcheck'
* using R version 2.8.1 (2008-12-22)
* using session charset: ISO8859-1
* checking for file 'PCpheno/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'PCpheno' version '1.4.1'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'PCpheno' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* creating PCpheno-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating PCpheno-manual.tex ... OK
* checking PCpheno-manual.tex using pdflatex ... OK
installing R.css in E:/biocbld/bbs-2.3-bioc/meat/PCpheno.Rcheck
---------- Making package PCpheno ------------
adding build stamp to DESCRIPTION
installing NAMESPACE file and metadata
installing R files
installing inst files
installing data files
preparing package PCpheno for lazy loading
Loading required package: ScISI
Loading required package: apComplex
Loading required package: graph
Loading required package: RBGL
Loading required package: Rgraphviz
Loading required package: grid
Loading required package: org.Sc.sgd.db
Loading required package: AnnotationDbi
Loading required package: Biobase
Loading required package: tools
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Loading required package: DBI
Loading required package: GO.db
Loading required package: GOstats
Loading required package: annotate
Loading required package: xtable
Attaching package: 'annotate'
The following object(s) are masked from package:Rgraphviz :
toFile
Loading required package: Category
Loading required package: genefilter
Loading required package: survival
Loading required package: splines
Loading required package: RpsiXML
Loading required package: XML
Attaching package: 'XML'
The following object(s) are masked from package:graph :
addNode
Loading required package: hypergraph
Attaching package: 'hypergraph'
The following object(s) are masked from package:xtable :
label,
label<-
The following object(s) are masked from package:AnnotationDbi :
head,
tail
The following object(s) are masked from package:Rgraphviz :
head,
tail
The following object(s) are masked from package:utils :
head,
tail
Loading required package: SLGI
Loading required package: lattice
Loading required package: ppiStats
Loading required package: ppiData
Loading required package: RColorBrewer
Loading required package: KEGG.db
installing man source files
installing indices
not zipping data
installing help
>>> Building/Updating help pages for package 'PCpheno'
Formats: text html latex example chm
CoHyperGParams-class text html latex chm
CoHyperGResult-class text html latex example chm
Dudley text html latex example chm
Giaever text html latex example chm
HI text html latex example chm
KEGG2SCISI text html latex example chm
Kastenmayer text html latex example chm
Lesage text html latex example chm
Osterberg text html latex example chm
PCpheno.package text html latex chm
SGDphenoL text html latex example chm
YEASTOHNOLOG text html latex example chm
buildFDMat text html latex example chm
categoryToEntrezBuilder text html latex example chm
complexStatus text html latex example chm
deResult-class text html latex example chm
densityEstimate text html latex example chm
getDescr text html latex example chm
getFDgene text html latex example chm
graphTheory text html latex example chm
gtResult-class text html latex example chm
overlap text html latex example chm
plot text html latex example chm
ppiInteraction text html latex example chm
reduceM text html latex example chm
testResult-class text html latex chm
truncName text html latex example chm
Microsoft HTML Help Compiler 4.74.8702
Compiling e:\biocbld\bbs-2.3-bioc\meat\PCpheno.Rcheck\00_pkg_src\PCpheno\chm\PCpheno.chm
Compile time: 0 minutes, 0 seconds
28 Topics
109 Local links
9 Internet links
1 Graphic
Created e:\biocbld\bbs-2.3-bioc\meat\PCpheno.Rcheck\00_pkg_src\PCpheno\chm\PCpheno.chm, 55,562 bytes
Compression decreased file by 49,541 bytes.
adding MD5 sums
* DONE (PCpheno)