simpleaffy 2.16.1
Crispin Miller
| Snapshot Date: 2008-10-16 00:10:09 -0700 (Thu, 16 Oct 2008) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_2/madman/Rpacks/simpleaffy | | Last Changed Rev: 33630 / Revision: 34573 | | Last Changed Date: 2008-09-08 16:17:35 -0700 (Mon, 08 Sep 2008) |
| lamb1 | Linux (SUSE 10.1) / x86_64 | OK | OK | |
| wilson2 | Linux (openSUSE 10.3) / x86_64 | OK | OK | |
| wellington | Linux (openSUSE 10.3) / i686 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | OK | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | [ OK ] | OK | OK |
* checking for file 'simpleaffy/DESCRIPTION' ... OK
* preparing 'simpleaffy':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to re-build vignettes
* Installing *source* package 'simpleaffy' ...
** libs
** arch - i386
gcc -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -mmacosx-version-min=10.4 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -msse3 -fPIC -g -O2 -march=nocona -c simpleaffy.c -o simpleaffy.o
gcc -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -mmacosx-version-min=10.4 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -mmacosx-version-min=10.4 -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o simpleaffy.so simpleaffy.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
** arch - ppc
gcc -arch ppc -isysroot /Developer/SDKs/MacOSX10.4u.sdk -mmacosx-version-min=10.4 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -fPIC -g -O2 -c simpleaffy.c -o simpleaffy.o
gcc -arch ppc -isysroot /Developer/SDKs/MacOSX10.4u.sdk -mmacosx-version-min=10.4 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -mmacosx-version-min=10.4 -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o simpleaffy.so simpleaffy.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
** R
** data
** inst
** preparing package for lazy loading
Loading required package: affy
Loading required package: Biobase
Loading required package: tools
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Loading required package: affyio
Loading required package: preprocessCore
Loading required package: genefilter
Loading required package: survival
Loading required package: splines
Loading required package: gcrma
Loading required package: matchprobes
** help
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>>> Building/Updating help pages for package 'simpleaffy'
Formats: text html latex example
PairComp-class text html latex
QCStats-class text html latex
all.present text html latex example
all.present.in.group text html latex example
bg.correct.sa text html latex example
call.exprs text html latex example
detection.p.val text html latex example
get.annotation text html latex example
get.array.indices text html latex example
get.array.subset text html latex example
get.array.subset.affy text html latex example
get.fold.change.and.t.test text html latex example
hmap.colors text html latex example
hmap.eset text html latex example
hmap.pc text html latex example
journalpng text html latex example
justMAS text html latex example
pairwise.comparison text html latex example
pairwise.filter text html latex example
plot.pairwise.comparison text html latex example
plot.qc.stats text html latex example
qc text html latex example
qc.affy text html latex example
qc.get.alpha1 text html latex example
qc.get.array text html latex example
qc.get.probes text html latex example
qc.get.ratios text html latex example
qc.get.spikes text html latex example
qc.have.params text html latex example
qc.ok text html latex example
qc.read.file text html latex example
qc.stats text html latex example
read.affy text html latex example
read.affy.mixed text html latex example
setQCEnvironment text html latex example
simpleaffy-deprecated text html latex example
standard.pearson text html latex example
trad.scatter.plot text html latex example
** building package indices ...
* DONE (simpleaffy)
* creating vignettes ... OK
* cleaning src
* removing junk files
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* building 'simpleaffy_2.16.1.tar.gz'